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JPred4: a protein secondary structure prediction server

Nucleic acids research, 2015-07, Vol.43 (W1), p.W389-W394

2015

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How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

RNA (Cambridge), 2016-06, Vol.22 (6), p.839-851

2016

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Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variants

PLoS computational biology, 2022-03, Vol.18 (3), p.e1009922-e1009922

2022

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Jalview Version 2—a multiple sequence alignment editor and analysis workbench

Bioinformatics, 2009-05, Vol.25 (9), p.1189-1191

2009

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14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides

Bioinformatics, 2015-07, Vol.31 (14), p.2276-2283

2015

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Identifying plant genes shaping microbiota composition in the barley rhizosphere

Nature communications, 2022-06, Vol.13 (1), p.3443-3443, Article 3443

2022

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Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

RNA (Cambridge), 2009-12, Vol.15 (12), p.2147-2160

2009

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NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins

BMC bioinformatics, 2011-08, Vol.12 (1), p.317-317, Article 317

2011

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Regulation of the miR-212/132 locus by MSK1 and CREB in response to neurotrophins

Biochemical journal, 2010-06, Vol.428 (2), p.281-291

2010

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Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA

PLoS genetics, 2013-10, Vol.9 (10), p.e1003867-e1003867

2013

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2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

Genome Biology, 2021-03, Vol.22 (1), p.72-72, Article 72

2021

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A study of the structural properties of sites modified by the O-linked 6-N-acetylglucosamine transferase

PloS one, 2017-09, Vol.12 (9), p.e0184405-e0184405

2017

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The Jalview Java alignment editor

Bioinformatics, 2004-02, Vol.20 (3), p.426-427

2004

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Live imaging of nascent RNA dynamics reveals distinct types of transcriptional pulse regulation

Proceedings of the National Academy of Sciences - PNAS, 2012-05, Vol.109 (19), p.7350-7355

2012

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Human miRNA precursors with box H/ACA snoRNA features

PLoS computational biology, 2009-09, Vol.5 (9), p.e1000507-e1000507

2009

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Java bioinformatics analysis web services for multiple sequence alignment-JABAWS:MSA

Bioinformatics, 2011-07, Vol.27 (14), p.2001-2002

2011

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Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation

Nature structural & molecular biology, 2012-08, Vol.19 (8), p.845-852

2012

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Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K

eLife, 2023-10, Vol.12

2023

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Filaggrin-stratified transcriptomic analysis of pediatric skin identifies mechanistic pathways in patients with atopic dermatitis

Journal of allergy and clinical immunology, 2014-07, Vol.134 (1), p.82-91

2014

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Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment

Bioinformatics (Oxford, England), 2015-11, Vol.31 (22), p.3625-3630

2015

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Classification and functional annotation of eukaryotic protein kinases

Proteins, structure, function, and bioinformatics, 2007-09, Vol.68 (4), p.893-914

2007

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Correction: A study of the structural properties of sites modified by the O-linked 6-N-acetylglucosamine transferase

PloS one, 2017-12, Vol.12 (12), p.e0190461-e0190461

2017

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Characterization and prediction of protein nucleolar localization sequences

Nucleic acids research, 2010-11, Vol.38 (21), p.7388-7399

2010

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Ankyrin repeats in context with human population variation

PLoS computational biology, 2021-08, Vol.17 (8), p.e1009335-e1009335

2021

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JPred4: a protein secondary structure prediction server

How many biological replicates are needed in an RNA-seq experiment and which differential expression tool should you use?

Missense variants in human ACE2 strongly affect binding to SARS-CoV-2 Spike providing a mechanism for ACE2 mediated genetic risk in Covid-19: A case study in affinity predictions of interface variants

Jalview Version 2—a multiple sequence alignment editor and analysis workbench

14-3-3-Pred: improved methods to predict 14-3-3-binding phosphopeptides

Identifying plant genes shaping microbiota composition in the barley rhizosphere

Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs

NoD: a Nucleolar localization sequence detector for eukaryotic and viral proteins

Regulation of the miR-212/132 locus by MSK1 and CREB in response to neurotrophins

Transcription termination and chimeric RNA formation controlled by Arabidopsis thaliana FPA

2passtools: two-pass alignment using machine-learning-filtered splice junctions increases the accuracy of intron detection in long-read RNA sequencing

A study of the structural properties of sites modified by the O-linked 6-N-acetylglucosamine transferase

Chromosome evolution and the genetic basis of agronomically important traits in greater yam

The Jalview Java alignment editor

Live imaging of nascent RNA dynamics reveals distinct types of transcriptional pulse regulation

Human miRNA precursors with box H/ACA snoRNA features

Java bioinformatics analysis web services for multiple sequence alignment-JABAWS:MSA

Direct sequencing of Arabidopsis thaliana RNA reveals patterns of cleavage and polyadenylation

Inter-species association mapping links splice site evolution to METTL16 and SNRNP27K

Filaggrin-stratified transcriptomic analysis of pediatric skin identifies mechanistic pathways in patients with atopic dermatitis

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment

Classification and functional annotation of eukaryotic protein kinases

Correction: A study of the structural properties of sites modified by the O-linked 6-N-acetylglucosamine transferase

Characterization and prediction of protein nucleolar localization sequences

Ankyrin repeats in context with human population variation

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