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CRISPR-Cas9-Mediated Gene Knockout in a Non-Model Sea Urchin, Heliocidaris crassispina

Zoological science, 2024-04, Vol.41 (2), p.159

2024

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Establishment of knockout adult sea urchins by using a CRISPR‐Cas9 system

Development, growth & differentiation, 2019-08, Vol.61 (6), p.378-388

2019

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Molecular dynamics analysis of biomolecular systems including nucleic acids

Biophysics and Physicobiology, 2022, Vol.19, pp.e190027

2022

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Insulator Activities of Nucleosome-Excluding DNA Sequences without Bound Chromatin Looping Proteins

The journal of physical chemistry. B, 2019-02, Vol.123 (5), p.1035-1043

2019

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Epigenetic-structural changes in X chromosomes promote Xic pairing during early differentiation of mouse embryonic stem cells

Biophysics and Physicobiology, 2022, Vol.19, pp.e190018

2022

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Mathematical model of structural changes in nuclear speckle

Biophysics and Physicobiology, 2023, Vol.20(2), pp.e200020

2023

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Simple Elastic Network Models for Exhaustive Analysis of Long Double-Stranded DNA Dynamics with Sequence Geometry Dependence

PloS one, 2015-12, Vol.10 (12), p.e0143760-e0143760

2015

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Partial exogastrulation due to apical–basal polarity of F‐actin distribution disruption in sea urchin embryo by omeprazole

Genes to cells : devoted to molecular & cellular mechanisms, 2022-06, Vol.27 (6), p.392-408

2022

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Identification of aberrant transcription termination at specific gene loci with DNA hypomethylated transcription termination sites caused by DNA methyltransferase deficiency

Genes & Genetic Systems, 2022/06/01, Vol.97(3), pp.139-152

2022

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Affinity of rhodopsin to raft enables the aligned oligomer formation from dimers: Coarse-grained molecular dynamics simulation of disk membranes

PloS one, 2020-02, Vol.15 (2), p.e0226123-e0226123

2020

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Prediction of nucleosome positioning by the incorporation of frequencies and distributions of three different nucleotide segment lengths into a general pseudo k-tuple nucleotide composition

Bioinformatics (Oxford, England), 2017-01, Vol.33 (1), p.42-48

2017

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Mathematical model of chromosomal dynamics during DNA double strand break repair in budding yeast

Biophysics and Physicobiology, 2022, Vol.19, pp.e190012

2022

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Broad distribution spectrum from Gaussian to power law appears in stochastic variations in RNA-seq data

Scientific reports, 2018-05, Vol.8 (1), p.8339-8, Article 8339

2018

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Ultrasensitive Change in Nucleosome Binding by Multiple Phosphorylations to the Intrinsically Disordered Region of the Histone Chaperone FACT

Journal of molecular biology, 2020-07, Vol.432 (16), p.4637-4657

2020

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Reciprocating Motion of a Self-Propelled Rotor Induced by Forced Halt and Release Operations

Journal of physical chemistry. C, 2018-02, Vol.122 (6), p.3482-3487

2018

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Dynamic changes in the interchromosomal interaction of early histone gene loci during development of sea urchin

Journal of cell science, 2017-12, Vol.130 (24), p.4097-4107

2017

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The Flux of Euglena gracilis Cells Depends on the Gradient of Light Intensity

PloS one, 2016-12, Vol.11 (12), p.e0168114-e0168114

2016

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Chromosomal Abnormalities in Human Lymphocytes after Computed Tomography Scan Procedure

Radiation research, 2018-10, Vol.190 (4), p.424

2018

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Histone Tail Dynamics in Partially Disassembled Nucleosomes During Chromatin Remodeling

Frontiers in molecular biosciences, 2019-11, Vol.6, p.133-133

2019

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Diverse stochasticity leads a colony of ants to optimal foraging

Journal of theoretical biology, 2019-03, Vol.465, p.7-16

2019

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Noise–plasticity correlations of gene expression in the multicellular organism Arabidopsis thaliana

Journal of theoretical biology, 2015-12, Vol.387, p.13-22

2015

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1P270 Pattern formations of a polymer consisting of "hot" and "cold" monomers as a model of chromosome(24. Mathematical biology,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Seibutsu Butsuri, 2014/08/20, Vol.54(supplement1-2), pp.S185

Awazu, Akinori

2014

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Simple Particle Model for Low-Density Granular Flow Interacting with Ambient Fluid

Geosciences (Basel), 2020-02, Vol.10 (2), p.69

2020

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Bifurcation analysis of the transition of dune shapes under a unidirectional wind

Physical review letters, 2012-04, Vol.108 (15), p.158001-158001, Article 158001

2012

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CRISPR-Cas9-Mediated Gene Knockout in a Non-Model Sea Urchin, Heliocidaris crassispina

Establishment of knockout adult sea urchins by using a CRISPR‐Cas9 system

Molecular dynamics analysis of biomolecular systems including nucleic acids

Insulator Activities of Nucleosome-Excluding DNA Sequences without Bound Chromatin Looping Proteins

Epigenetic-structural changes in X chromosomes promote Xic pairing during early differentiation of mouse embryonic stem cells

Mathematical model of structural changes in nuclear speckle

Risk stratification of ventricular fibrillation in Brugada syndrome using noninvasive scoring methods

Simple Elastic Network Models for Exhaustive Analysis of Long Double-Stranded DNA Dynamics with Sequence Geometry Dependence

Partial exogastrulation due to apical–basal polarity of F‐actin distribution disruption in sea urchin embryo by omeprazole

Identification of aberrant transcription termination at specific gene loci with DNA hypomethylated transcription termination sites caused by DNA methyltransferase deficiency

Affinity of rhodopsin to raft enables the aligned oligomer formation from dimers: Coarse-grained molecular dynamics simulation of disk membranes

Prediction of nucleosome positioning by the incorporation of frequencies and distributions of three different nucleotide segment lengths into a general pseudo k-tuple nucleotide composition

Mathematical model of chromosomal dynamics during DNA double strand break repair in budding yeast

Broad distribution spectrum from Gaussian to power law appears in stochastic variations in RNA-seq data

Ultrasensitive Change in Nucleosome Binding by Multiple Phosphorylations to the Intrinsically Disordered Region of the Histone Chaperone FACT

Reciprocating Motion of a Self-Propelled Rotor Induced by Forced Halt and Release Operations

Dynamic changes in the interchromosomal interaction of early histone gene loci during development of sea urchin

The Flux of Euglena gracilis Cells Depends on the Gradient of Light Intensity

Chromosomal Abnormalities in Human Lymphocytes after Computed Tomography Scan Procedure

Histone Tail Dynamics in Partially Disassembled Nucleosomes During Chromatin Remodeling

Diverse stochasticity leads a colony of ants to optimal foraging

Noise–plasticity correlations of gene expression in the multicellular organism Arabidopsis thaliana

1P270 Pattern formations of a polymer consisting of "hot" and "cold" monomers as a model of chromosome(24. Mathematical biology,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))

Simple Particle Model for Low-Density Granular Flow Interacting with Ambient Fluid

Bifurcation analysis of the transition of dune shapes under a unidirectional wind

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