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Equitability, mutual information, and the maximal information coefficient

Proceedings of the National Academy of Sciences - PNAS, 2014-03, Vol.111 (9), p.3354-3359

2014

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REGN-COV2 antibodies prevent and treat SARS-CoV-2 infection in rhesus macaques and hamsters

Science (American Association for the Advancement of Science), 2020-11, Vol.370 (6520), p.1110-1115

2020

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Ancient trans-Acting siRNAs Confer Robustness and Sensitivity onto the Auxin Response

Developmental cell, 2016-02, Vol.36 (3), p.276-289

2016

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Designing meaningful continuous representations of T cell receptor sequences with deep generative models

Nature communications, 2024-05, Vol.15 (1), p.4271-14, Article 4271

2024

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Single T Cell Sequencing Demonstrates the Functional Role of αβ TCR Pairing in Cell Lineage and Antigen Specificity

Frontiers in immunology, 2019-07, Vol.10, p.1516-1516

2019

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Identification of PHLPP1 as a Tumor Suppressor Reveals the Role of Feedback Activation in PTEN-Mutant Prostate Cancer Progression

Cancer cell, 2011-08, Vol.20 (2), p.173-186

2011

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Single-cell RNA transcriptome landscape of hepatocytes and non-parenchymal cells in healthy and NAFLD mouse liver

iScience, 2021-11, Vol.24 (11), p.103233-103233, Article 103233

2021

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Proteogenomic identification of Hepatitis B virus (HBV) genotype-specific HLA-I restricted peptides from HBV-positive patient liver tissues

Frontiers in immunology, 2022-12, Vol.13, p.1032716-1032716

2022

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Microenvironment-dependent growth of Sezary cells in humanized IL-15 mice

Disease models & mechanisms, 2023-10, Vol.16 (10)

2023

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Age-related gene expression signatures from limb skeletal muscles and the diaphragm in mice and rats reveal common and species-specific changes

Skeletal muscle, 2023-07, Vol.13 (1), p.11-11, Article 11

2023

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Reply to Reshef et al.: Falsifiability or bust

Proceedings of the National Academy of Sciences - PNAS, 2014-08, Vol.111 (33), p.E3364-E3364

2014

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Antibody cocktail to SARS-CoV-2 spike protein prevents rapid mutational escape seen with individual antibodies

Science (American Association for the Advancement of Science), 2020-08, Vol.369 (6506), p.1014-1018

2020

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Identification of pan-cancer/testis genes and validation of therapeutic targeting in triple-negative breast cancer: Lin28a-based and Siglece-based vaccination induces antitumor immunity and inhibits metastasis

Journal for immunotherapy of cancer, 2023-12, Vol.11 (12), p.e007935

2023

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p53: A new player in reproduction

Cell cycle (Georgetown, Tex.), 2008-04, Vol.7 (7), p.848-852

2008

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AdRoit is an accurate and robust method to infer complex transcriptome composition

Communications biology, 2021-10, Vol.4 (1), p.1218-1218, Article 1218

2021

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Reply to Murrell et al.: Noise matters

Proceedings of the National Academy of Sciences - PNAS, 2014-05, Vol.111 (21), p.E2161-E2161

2014

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Interactive analysis and assessment of single-cell copy-number variations

Nature methods, 2015-11, Vol.12 (11), p.1058-1060

2015

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IMPRES does not reproducibly predict response to immune checkpoint blockade therapy in metastatic melanoma

Nature medicine, 2019-12, Vol.25 (12), p.1833-1835

2019

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Common and rare variant associations with clonal haematopoiesis phenotypes

Nature (London), 2022-12, Vol.612 (7939), p.301-309

2022

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Intratumoral dendritic cell–CD4+ T helper cell niches enable CD8+ T cell differentiation following PD-1 blockade in hepatocellular carcinoma

Nature medicine, 2023-06, Vol.29 (6), p.1389-1399

2023

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Butyrophilin-like 2 regulates site-specific adaptations of intestinal γδ intraepithelial lymphocytes

Communications biology, 2021-07, Vol.4 (1), p.913-913, Article 913

2021

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LTβR Agonism Promotes Anti-Tumor Immune Responses via Modulation of the Tumor Microenvironment

Cancer research (Chicago, Ill.), 2024-08

2024

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Developmental Coordination of Gene Expression between Synaptic Partners During GABAergic Circuit Assembly in Cerebellar Cortex

Frontiers in neural circuits, 2012-06, Vol.6, p.37-37

2012

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Equitability, mutual information, and the maximal information coefficient

REGN-COV2 antibodies prevent and treat SARS-CoV-2 infection in rhesus macaques and hamsters

Ancient trans-Acting siRNAs Confer Robustness and Sensitivity onto the Auxin Response

Designing meaningful continuous representations of T cell receptor sequences with deep generative models

Single T Cell Sequencing Demonstrates the Functional Role of αβ TCR Pairing in Cell Lineage and Antigen Specificity

Identification of PHLPP1 as a Tumor Suppressor Reveals the Role of Feedback Activation in PTEN-Mutant Prostate Cancer Progression

Single-cell RNA transcriptome landscape of hepatocytes and non-parenchymal cells in healthy and NAFLD mouse liver

Proteogenomic identification of Hepatitis B virus (HBV) genotype-specific HLA-I restricted peptides from HBV-positive patient liver tissues

Microenvironment-dependent growth of Sezary cells in humanized IL-15 mice

Age-related gene expression signatures from limb skeletal muscles and the diaphragm in mice and rats reveal common and species-specific changes

Digital wearable insole-based identification of knee arthropathies and gait signatures using machine learning

Reply to Reshef et al.: Falsifiability or bust

Antibody cocktail to SARS-CoV-2 spike protein prevents rapid mutational escape seen with individual antibodies

Identification of pan-cancer/testis genes and validation of therapeutic targeting in triple-negative breast cancer: Lin28a-based and Siglece-based vaccination induces antitumor immunity and inhibits metastasis

p53: A new player in reproduction

AdRoit is an accurate and robust method to infer complex transcriptome composition

Reply to Murrell et al.: Noise matters

Interactive analysis and assessment of single-cell copy-number variations

IMPRES does not reproducibly predict response to immune checkpoint blockade therapy in metastatic melanoma

Common and rare variant associations with clonal haematopoiesis phenotypes

The monoclonal antibody combination REGEN-COV protects against SARS-CoV-2 mutational escape in preclinical and human studies

Intratumoral dendritic cell–CD4+ T helper cell niches enable CD8+ T cell differentiation following PD-1 blockade in hepatocellular carcinoma

Butyrophilin-like 2 regulates site-specific adaptations of intestinal γδ intraepithelial lymphocytes

LTβR Agonism Promotes Anti-Tumor Immune Responses via Modulation of the Tumor Microenvironment

Developmental Coordination of Gene Expression between Synaptic Partners During GABAergic Circuit Assembly in Cerebellar Cortex

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