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Simultaneous Bayesian gene tree reconstruction and reconciliation analysis

Proceedings of the National Academy of Sciences - PNAS, 2009-04, Vol.106 (14), p.5714-5719

2009

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The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants

Genome biology and evolution, 2020-01, Vol.12 (1), p.3586-3598

2020

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WORMHOLE: Novel Least Diverged Ortholog Prediction through Machine Learning

PLoS computational biology, 2016-11, Vol.12 (11), p.e1005182-e1005182

2016

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The Gene Evolution Model and Computing Its Associated Probabilities

Journal of the ACM, 2009-04, Vol.56 (2), p.1-41

2009

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Improved gap size estimation for scaffolding algorithms

Bioinformatics, 2012-09, Vol.28 (17), p.2215-2222

2012

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Genome-wide survey for biologically functional pseudogenes

PLoS computational biology, 2006-05, Vol.2 (5), p.e46-e46

2006

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Excap: maximization of haplotypic diversity of linked markers

PloS one, 2013-11, Vol.8 (11), p.e79012-e79012

2013

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genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes

Planta, 2005-07, Vol.221 (5), p.739-746

2005

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MAP20, a Microtubule-Associated Protein in the Secondary Cell Walls of Hybrid Aspen, Is a Target of the Cellulose Synthesis Inhibitor 2,6-Dichlorobenzonitrile

Plant physiology (Bethesda), 2008-11, Vol.148 (3), p.1283-1294

2008

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Diversity and evolution of chitin synthases in oomycetes (Straminipila: Oomycota)

Molecular phylogenetics and evolution, 2019-10, Vol.139, p.106558-106558, Article 106558

2019

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Assembly scaffolding with PE-contaminated mate-pair libraries

Bioinformatics, 2016-07, Vol.32 (13), p.1925-1932

2016

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alv: a console-based viewer for molecular sequence alignments

Journal of open source software, 2018-11, Vol.3 (31), p.955

Arvestad, Lars

2018

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BESST--efficient scaffolding of large fragmented assemblies

BMC bioinformatics, 2014-08, Vol.15 (1), p.281-281, Article 281

2014

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Identification of the cellulose synthase genes from the Oomycete Saprolegnia monoica and effect of cellulose synthesis inhibitors on gene expression and enzyme activity

Fungal genetics and biology, 2009-10, Vol.46 (10), p.759-767

2009

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Diversity and evolution of chitin synthases in oomycetes (Straminipila: Oomycota

Molecular phylogenetics and evolution, 2019, Vol.139

2019

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GAM-NGS: genomic assemblies merger for next generation sequencing

BMC bioinformatics, 2013, Vol.14 Suppl 7 (Suppl 7), p.S6-S6, Article S6

2013

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Evolution and human tissue expression of the Cres/Testatin subgroup genes, a reproductive tissue specific subgroup of the type 2 cystatins

Evolution & development, 2010-05, Vol.12 (3), p.329-342

2010

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primetv: a viewer for reconciled trees

BMC bioinformatics, 2007-05, Vol.8 (1), p.148-148, Article 148

2007

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A Bayesian Method for Analyzing Lateral Gene Transfer

Systematic biology, 2014-05, Vol.63 (3), p.409-420

2014

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Efficient methods for estimating amino acid replacement rates

Journal of molecular evolution, 2006-06, Vol.62 (6), p.663-673

Arvestad, Lars

2006

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GenPhyloData: realistic simulation of gene family evolution

BMC bioinformatics, 2013-06, Vol.14 (1), p.209-209, Article 209

2013

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VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces

BMC bioinformatics, 2017-02, Vol.18 (1), p.97-97, Article 97

2017

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Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias

Journal of computational biology, 2017-06, Vol.24 (6), p.581-589

2017

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DLRS: gene tree evolution in light of a species tree

Bioinformatics, 2012-11, Vol.28 (22), p.2994-2995

2012

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Probabilistic inference of lateral gene transfer events

BMC bioinformatics, 2016-11, Vol.17 (Suppl 14), p.431-431, Article 431

2016

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Simultaneous Bayesian gene tree reconstruction and reconciliation analysis

The Mitogenome of Norway Spruce and a Reappraisal of Mitochondrial Recombination in Plants

WORMHOLE: Novel Least Diverged Ortholog Prediction through Machine Learning

The Gene Evolution Model and Computing Its Associated Probabilities

Improved gap size estimation for scaffolding algorithms

Genome-wide survey for biologically functional pseudogenes

Excap: maximization of haplotypic diversity of linked markers

genome sequence of black cottonwood (Populus trichocarpa) reveals 18 conserved cellulose synthase (CesA) genes

MAP20, a Microtubule-Associated Protein in the Secondary Cell Walls of Hybrid Aspen, Is a Target of the Cellulose Synthesis Inhibitor 2,6-Dichlorobenzonitrile

Diversity and evolution of chitin synthases in oomycetes (Straminipila: Oomycota)

Assembly scaffolding with PE-contaminated mate-pair libraries

alv: a console-based viewer for molecular sequence alignments

BESST--efficient scaffolding of large fragmented assemblies

Identification of the cellulose synthase genes from the Oomycete Saprolegnia monoica and effect of cellulose synthesis inhibitors on gene expression and enzyme activity

Diversity and evolution of chitin synthases in oomycetes (Straminipila: Oomycota

GAM-NGS: genomic assemblies merger for next generation sequencing

Evolution and human tissue expression of the Cres/Testatin subgroup genes, a reproductive tissue specific subgroup of the type 2 cystatins

primetv: a viewer for reconciled trees

A Bayesian Method for Analyzing Lateral Gene Transfer

Efficient methods for estimating amino acid replacement rates

GenPhyloData: realistic simulation of gene family evolution

VMCMC: a graphical and statistical analysis tool for Markov chain Monte Carlo traces

Structural Variation Detection with Read Pair Information: An Improved Null Hypothesis Reduces Bias

DLRS: gene tree evolution in light of a species tree

Probabilistic inference of lateral gene transfer events

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