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TRS: a method for determining transcript termini from RNAtag-seq sequencing data

Nature communications, 2023-11, Vol.14 (1), p.7843-7843, Article 7843

2023

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Global Mapping of Small RNA-Target Interactions in Bacteria

Molecular cell, 2016-09, Vol.63 (5), p.884-897

2016

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Prediction of Novel Bacterial Small RNAs From RIL-Seq RNA–RNA Interaction Data

Frontiers in microbiology, 2021-05, Vol.12, p.635070-635070

2021

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Interplay between the DNA Damage Proteins MDC1 and ATM in the Regulation of the Spindle Assembly Checkpoint

The Journal of biological chemistry, 2014-03, Vol.289 (12), p.8182-8193

2014

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Post-transcriptional 3´-UTR cleavage of mRNA transcripts generates thousands of stable uncapped autonomous RNA fragments

Nature communications, 2017-12, Vol.8 (1), p.2029-11, Article 2029

2017

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Hierarchy in Hfq Chaperon Occupancy of Small RNA Targets Plays a Major Role in Their Regulation

Cell reports (Cambridge), 2020-03, Vol.30 (9), p.3127-3138.e6

2020

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Arginine dephosphorylation propels spore germination in bacteria

Proceedings of the National Academy of Sciences - PNAS, 2019-07, Vol.116 (28), p.14228-14237

2019

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The Small RNA IstR Inhibits Synthesis of an SOS-Induced Toxic Peptide

Current biology, 2004-12, Vol.14 (24), p.2271-2276

2004

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RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq

Proceedings of the National Academy of Sciences - PNAS, 2012-03, Vol.109 (12), p.4621-4626

2012

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The Direct Interaction between 53BP1 and MDC1 Is Required for the Recruitment of 53BP1 to Sites of Damage

The Journal of biological chemistry, 2009-01, Vol.284 (1), p.426-435

2009

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Acetylation of lysine 382 and phosphorylation of serine 392 in p53 modulate the interaction between p53 and MDC1 in vitro

PloS one, 2013-10, Vol.8 (10), p.e78472-e78472

2013

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The DNA Damage Response Mediator MDC1 Directly Interacts with the Anaphase-promoting Complex/Cyclosome

The Journal of biological chemistry, 2007-11, Vol.282 (44), p.32053-32064

2007

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Unraveling the interplay between a small RNA and RNase E in bacteria

Nucleic acids research, 2024-08, Vol.52 (15), p.8947-8966

2024

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RIL-seq reveals extensive involvement of small RNAs in virulence and capsule regulation in hypervirulent Klebsiella pneumoniae

Nucleic acids research, 2024-08, Vol.52 (15), p.9119-9138

2024

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Mapping the small RNA interactome in bacteria using RIL-seq

Nature protocols, 2018-01, Vol.13 (1), p.1-33

2018

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In vivo cleavage rules and target repertoire of RNase III in Escherichia coli

Nucleic acids research, 2018-11

2018

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In vivo cleavage rules and target repertoire of RNase III in Escherichia coli

Nucleic acids research, 2018-11, Vol.46 (19), p.10530-10531

2018

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Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

Current biology, 2001-06, Vol.11 (12), p.941-950

2001

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fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complex

Journal of molecular biology, 2000-07, Vol.300 (5), p.1101-1112

2000

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The impact of Hfq-mediated sRNA-mRNA interactome on the virulence of enteropathogenic Escherichia coli

Science advances, 2021-10, Vol.7 (44), p.eabi8228-eabi8228

2021

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fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complex11Edited by M. Gottesman

Journal of molecular biology, 2000-07, Vol.300 (5), p.1101-1112

2000

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MDC1 is ubiquitylated on its tandem BRCT domain and directly binds RAP80 in a UBC13-dependent manner

DNA repair, 2011-08, Vol.10 (8), p.806-814

2011

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The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

The EMBO journal, 1998-10, Vol.17 (20), p.6061-6068

1998

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The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding

The EMBO journal, 1998-10, Vol.17 (20), p.6069-6075

1998

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Acetylation of Lysine 382 and Phosphorylation of Serine 392 in p53 Modulate the Interaction between p53 and MDC1 In Vitro: e78472

PloS one, 2013-10, Vol.8 (10)

2013

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TRS: a method for determining transcript termini from RNAtag-seq sequencing data

Global Mapping of Small RNA-Target Interactions in Bacteria

Prediction of Novel Bacterial Small RNAs From RIL-Seq RNA–RNA Interaction Data

Interplay between the DNA Damage Proteins MDC1 and ATM in the Regulation of the Spindle Assembly Checkpoint

Post-transcriptional 3´-UTR cleavage of mRNA transcripts generates thousands of stable uncapped autonomous RNA fragments

Hierarchy in Hfq Chaperon Occupancy of Small RNA Targets Plays a Major Role in Their Regulation

Arginine dephosphorylation propels spore germination in bacteria

The Small RNA IstR Inhibits Synthesis of an SOS-Induced Toxic Peptide

RelA protein stimulates the activity of RyhB small RNA by acting on RNA-binding protein Hfq

The Direct Interaction between 53BP1 and MDC1 Is Required for the Recruitment of 53BP1 to Sites of Damage

Acetylation of lysine 382 and phosphorylation of serine 392 in p53 modulate the interaction between p53 and MDC1 in vitro

The DNA Damage Response Mediator MDC1 Directly Interacts with the Anaphase-promoting Complex/Cyclosome

Unraveling the interplay between a small RNA and RNase E in bacteria

RIL-seq reveals extensive involvement of small RNAs in virulence and capsule regulation in hypervirulent Klebsiella pneumoniae

Mapping the small RNA interactome in bacteria using RIL-seq

In vivo cleavage rules and target repertoire of RNase III in Escherichia coli

In vivo cleavage rules and target repertoire of RNase III in Escherichia coli

Novel small RNA-encoding genes in the intergenic regions of Escherichia coli

fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complex

The impact of Hfq-mediated sRNA-mRNA interactome on the virulence of enteropathogenic Escherichia coli

fhlA repression by OxyS RNA: kissing complex formation at two sites results in a stable antisense-target RNA complex11Edited by M. Gottesman

MDC1 is ubiquitylated on its tandem BRCT domain and directly binds RAP80 in a UBC13-dependent manner

The OxyS regulatory RNA represses rpoS translation and binds the Hfq (HF-I) protein

The Escherichia coli OxyS regulatory RNA represses fhlA translation by blocking ribosome binding

Acetylation of Lysine 382 and Phosphorylation of Serine 392 in p53 Modulate the Interaction between p53 and MDC1 In Vitro: e78472

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