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EasyModel: a user-friendly web-based interface based on MODELLER

Scientific reports, 2023-10, Vol.13 (1), p.17185-17185, Article 17185

2023

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In silico approaches to investigate enzyme immobilization: a comprehensive systematic review

Physical chemistry chemical physics : PCCP, 2024-02, Vol.26 (7), p.5744-5761

2024

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HOXB7 and Hsa-miR-222 as the Potential Therapeutic Candidates for Metastatic Colorectal Cancer

Recent patents on anti-cancer drug discovery, 2016-11, Vol.11 (4), p.434-443

2016

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Computational analysis of hydrogen bonds network dynamics in the water layers surrounding Aβ(1-42) and Aβ(1-40) peptide dimers

Journal of molecular liquids, 2024-08, Vol.408, p.125342, Article 125342

2024

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The hot sites of α-synuclein in amyloid fibril formation

Scientific reports, 2020-07, Vol.10 (1), p.12175-12175, Article 12175

2020

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Simultaneous removal of cationic dyes from simulated industrial wastewater using sulfated alginate microparticles

Journal of molecular liquids, 2022-10, Vol.363, p.119880, Article 119880

2022

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Reconstructing the cell–cell interaction network among mouse immune cells

Biotechnology and bioengineering, 2023-09, Vol.120 (9), p.2756-2764

2023

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Design, synthesis, spectroscopic characterizations, antidiabetic, in silico and kinetic evaluation of novel curcumin-fused aldohexoses

Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy, 2023-01, Vol.285, p.121806, Article 121806

2023

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Rational peptide design for targeting cancer cell invasion

Proteins, structure, function, and bioinformatics, 2024-01, Vol.92 (1), p.76-95

2024

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Solvent-dependent activity of Candida antarctica lipase B and its correlation with a regioselective mono aza-Michael addition - experimental and molecular dynamics simulation studies

Heliyon, 2022-08, Vol.8 (8), p.e10336-e10336, Article e10336

2022

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CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis

PloS one, 2015-11, Vol.10 (11), p.e0143111-e0143111

2015

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ApInAPDB: a database of apoptosis-inducing anticancer peptides

Scientific reports, 2022-12, Vol.12 (1), p.21341-21341, Article 21341

2022

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Identification of Phytochemicals Targeting c-Met Kinase Domain using Consensus Docking and Molecular Dynamics Simulation Studies

Cell biochemistry and biophysics, 2018-06, Vol.76 (1-2), p.135-145

2018

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DFT study on CO2 capture using boron, nitrogen, and phosphorus-doped C20 in the presence of an electric field

Scientific reports, 2024-05, Vol.14 (1), p.12388-9, Article 12388

2024

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In silico design of potential Mcl-1 peptide-based inhibitors

Journal of molecular modeling, 2024-04, Vol.30 (4), p.108-108, Article 108

2024

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RepCOOL: computational drug repositioning via integrating heterogeneous biological networks

Journal of translational medicine, 2020-10, Vol.18 (1), p.375-375, Article 375

2020

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Evaluating the accuracy of protein design using native secondary sub-structures

BMC bioinformatics, 2016-09, Vol.17 (1), p.353-353, Article 353

2016

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MemBuilder: a web-based graphical interface to build heterogeneously mixed membrane bilayers for the GROMACS biomolecular simulation program

Bioinformatics, 2014-02, Vol.30 (3), p.439-441

2014

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Radiosynthesis, Biological Evaluation, and Preclinical Study of a 68Ga-Labeled Cyclic RGD Peptide as an Early Diagnostic Agent for Overexpressed αvβ3 Integrin Receptors in Non-Small-Cell Lung Cancer

Contrast media and molecular imaging, 2020-03, Vol.2020 (2020), p.1-11

2020

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A Novel in silico SELEX Method to Screen and Identify Aptamers against Vibrio cholerae

Current computer-aided drug design, 2023-01, Vol.19 (6), p.416-424

2023

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Improving the thermal stability of azoreductase from Halomonas elongata by introducing a disulfide bond via site‐directed mutagenesis

Biotechnology and applied biochemistry, 2018-11, Vol.65 (6), p.883-891

2018

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Topological Analysis of Regulatory Networks Reveals Functionally Key Genes and miRNAs Involved in the Differentiation of Mesenchymal Stem Cells

Iranian journal of biotechnology, 2021, Vol.19 (1), p.e2565-e2565

2021

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Reconstruction of Intercellular Signaling Network by Cytokine-Receptor Interactions

Iranian journal of biotechnology, 2021, Vol.19 (1), p.e2560-e2560

2021

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In Silico Analysis of Neutralizing Antibody Epitopes on The Hepatitis C Virus Surface Glycoproteins

Cell journal (Yakhteh), 2023-01, Vol.25 (1), p.62-72

2023

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OligoCOOL: A mobile application for nucleotide sequence analysis

Biochemistry and molecular biology education, 2019-03, Vol.47 (2), p.201-206

2019

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EasyModel: a user-friendly web-based interface based on MODELLER

In silico approaches to investigate enzyme immobilization: a comprehensive systematic review

HOXB7 and Hsa-miR-222 as the Potential Therapeutic Candidates for Metastatic Colorectal Cancer

Computational analysis of hydrogen bonds network dynamics in the water layers surrounding Aβ(1-42) and Aβ(1-40) peptide dimers

The hot sites of α-synuclein in amyloid fibril formation

Simultaneous removal of cationic dyes from simulated industrial wastewater using sulfated alginate microparticles

Reconstructing the cell–cell interaction network among mouse immune cells

Design, synthesis, spectroscopic characterizations, antidiabetic, in silico and kinetic evaluation of novel curcumin-fused aldohexoses

Rational peptide design for targeting cancer cell invasion

Solvent-dependent activity of Candida antarctica lipase B and its correlation with a regioselective mono aza-Michael addition - experimental and molecular dynamics simulation studies

CentiServer: A Comprehensive Resource, Web-Based Application and R Package for Centrality Analysis

ApInAPDB: a database of apoptosis-inducing anticancer peptides

Identification of Phytochemicals Targeting c-Met Kinase Domain using Consensus Docking and Molecular Dynamics Simulation Studies

DFT study on CO2 capture using boron, nitrogen, and phosphorus-doped C20 in the presence of an electric field

In silico design of potential Mcl-1 peptide-based inhibitors

RepCOOL: computational drug repositioning via integrating heterogeneous biological networks

Evaluating the accuracy of protein design using native secondary sub-structures

MemBuilder: a web-based graphical interface to build heterogeneously mixed membrane bilayers for the GROMACS biomolecular simulation program

Radiosynthesis, Biological Evaluation, and Preclinical Study of a 68Ga-Labeled Cyclic RGD Peptide as an Early Diagnostic Agent for Overexpressed αvβ3 Integrin Receptors in Non-Small-Cell Lung Cancer

A Novel in silico SELEX Method to Screen and Identify Aptamers against Vibrio cholerae

Improving the thermal stability of azoreductase from Halomonas elongata by introducing a disulfide bond via site‐directed mutagenesis

Topological Analysis of Regulatory Networks Reveals Functionally Key Genes and miRNAs Involved in the Differentiation of Mesenchymal Stem Cells

Reconstruction of Intercellular Signaling Network by Cytokine-Receptor Interactions

In Silico Analysis of Neutralizing Antibody Epitopes on The Hepatitis C Virus Surface Glycoproteins

OligoCOOL: A mobile application for nucleotide sequence analysis

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