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Location, location, location: it's all in the timing for replication origins

Genes & development, 2013-01, Vol.27 (2), p.117-128

Aparicio, Oscar M

2013

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Rif1 regulates initiation timing of late replication origins throughout the S. cerevisiae genome

PloS one, 2014-05, Vol.9 (5), p.e98501-e98501

2014

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Forkhead Transcription Factors Establish Origin Timing and Long-Range Clustering in S. cerevisiae

Cell, 2012-01, Vol.148 (1-2), p.99-111

2012

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Reconstructing cell cycle pseudo time-series via single-cell transcriptome data

Nature communications, 2017-06, Vol.8 (1), p.22-22, Article 22

2017

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DNA binding specificity of all four Saccharomyces cerevisiae forkhead transcription factors

Nucleic acids research, 2023-06, Vol.51 (11), p.5621

2023

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Broadly Applicable Control Approaches Improve Accuracy of ChIP-Seq Data

International journal of molecular sciences, 2023-05, Vol.24 (11), p.9271

2023

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Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae

Genes & development, 2009-05, Vol.23 (9), p.1077-1090

2009

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Dbf4 Zn-Finger Motif Is Specifically Required for Stimulation of Ctf19-Activated Origins in Saccharomyces cerevisiae

Genes, 2022-11, Vol.13 (12), p.2202

2022

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The level of origin firing inversely affects the rate of replication fork progression

The Journal of cell biology, 2013-04, Vol.201 (3), p.373-383

2013

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Fkh1 and Fkh2 bind multiple chromosomal elements in the S. cerevisiae genome with distinct specificities and cell cycle dynamics

PloS one, 2014-02, Vol.9 (2), p.e87647-e87647

2014

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Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae

BMC genomics, 2006-10, Vol.7 (1), p.276-276, Article 276

2006

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Dynamic relocalization of replication origins by Fkh1 requires execution of DDK function and Cdc45 loading at origins

eLife, 2019-05, Vol.8

2019

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The Rpd3-Sin3 Histone Deacetylase Regulates Replication Timing and Enables Intra-S Origin Control in Saccharomyces cerevisiae

Molecular and Cellular Biology, 2004-06, Vol.24 (11), p.4769-4780

2004

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Pph3-Psy2 is a phosphatase complex required for Rad53 dephosphorylation and replication fork restart during recovery from DNA damage

Proceedings of the National Academy of Sciences - PNAS, 2007-05, Vol.104 (22), p.9290-9295

2007

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Functional annotation and network reconstruction through cross-platform integration of microarray data

Nature biotechnology, 2005-02, Vol.23 (2), p.238-243

2005

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Rpd3 regulates single-copy origins independently of the rDNA array by opposing Fkh1-mediated origin stimulation

Proceedings of the National Academy of Sciences - PNAS, 2022-10, Vol.119 (40), p.1-e2212134119

2022

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H2A.Z Functions To Regulate Progression through the Cell Cycle

Molecular and Cellular Biology, 2006-01, Vol.26 (2), p.489-501

2006

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Differential Assembly of Cdc45p and DNA Polymerases at Early and Late Origins of DNA Replication

Proceedings of the National Academy of Sciences - PNAS, 1999-08, Vol.96 (16), p.9130-9135

1999

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Swe1 regulation and transcriptional control restrict the activity of mitotic cyclins toward replication proteins in Saccharomyces cerevisiae

Proceedings of the National Academy of Sciences - PNAS, 2005-06, Vol.102 (25), p.8910-8915

2005

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Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase

Genome research, 2016-03, Vol.26 (3), p.365

2016

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Strategies for analyzing highly enriched IP-chip datasets

BMC bioinformatics, 2009-09, Vol.10 (1), p.305-305, Article 305

2009

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Conserved forkhead dimerization motif controls DNA replication timing and spatial organization of chromosomes in S. cerevisiae

Proceedings of the National Academy of Sciences - PNAS, 2017-03, Vol.114 (12), p.E2411-E2419

2017

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Quantitative Bromodeoxyuridine Immunoprecipitation Analyzed by High-Throughput Sequencing (qBrdU-Seq or QBU)

Methods in molecular biology (Clifton, N.J.), 2018-01, Vol.1672, p.209

2018

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Diminished S-Phase Cyclin-Dependent Kinase Function Elicits Vital Rad53-Dependent Checkpoint Responses in Saccharomyces cerevisiae

Molecular and Cellular Biology, 2004-12, Vol.24 (23), p.10208-10222

2004

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Yeast telomere capping protein Stn1 overrides DNA replication control through the S phase checkpoint

Proceedings of the National Academy of Sciences - PNAS, 2009-02, Vol.106 (7), p.2206-2211

2009

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Location, location, location: it's all in the timing for replication origins

Rif1 regulates initiation timing of late replication origins throughout the S. cerevisiae genome

Forkhead Transcription Factors Establish Origin Timing and Long-Range Clustering in S. cerevisiae

Reconstructing cell cycle pseudo time-series via single-cell transcriptome data

DNA binding specificity of all four Saccharomyces cerevisiae forkhead transcription factors

Broadly Applicable Control Approaches Improve Accuracy of ChIP-Seq Data

Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae

Dbf4 Zn-Finger Motif Is Specifically Required for Stimulation of Ctf19-Activated Origins in Saccharomyces cerevisiae

The level of origin firing inversely affects the rate of replication fork progression

Fkh1 and Fkh2 bind multiple chromosomal elements in the S. cerevisiae genome with distinct specificities and cell cycle dynamics

Genome-wide mapping of ORC and Mcm2p binding sites on tiling arrays and identification of essential ARS consensus sequences in S. cerevisiae

Dynamic relocalization of replication origins by Fkh1 requires execution of DDK function and Cdc45 loading at origins

The Rpd3-Sin3 Histone Deacetylase Regulates Replication Timing and Enables Intra-S Origin Control in Saccharomyces cerevisiae

Pph3-Psy2 is a phosphatase complex required for Rad53 dephosphorylation and replication fork restart during recovery from DNA damage

Functional annotation and network reconstruction through cross-platform integration of microarray data

Rpd3 regulates single-copy origins independently of the rDNA array by opposing Fkh1-mediated origin stimulation

H2A.Z Functions To Regulate Progression through the Cell Cycle

Differential Assembly of Cdc45p and DNA Polymerases at Early and Late Origins of DNA Replication

Swe1 regulation and transcriptional control restrict the activity of mitotic cyclins toward replication proteins in Saccharomyces cerevisiae

Quantitative BrdU immunoprecipitation method demonstrates that Fkh1 and Fkh2 are rate-limiting activators of replication origins that reprogram replication timing in G1 phase

Strategies for analyzing highly enriched IP-chip datasets

Conserved forkhead dimerization motif controls DNA replication timing and spatial organization of chromosomes in S. cerevisiae

Quantitative Bromodeoxyuridine Immunoprecipitation Analyzed by High-Throughput Sequencing (qBrdU-Seq or QBU)

Diminished S-Phase Cyclin-Dependent Kinase Function Elicits Vital Rad53-Dependent Checkpoint Responses in Saccharomyces cerevisiae

Yeast telomere capping protein Stn1 overrides DNA replication control through the S phase checkpoint

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