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Multiple Epigenetic Mechanisms and the piRNA Pathway Enforce LINE1 Silencing during Adult Spermatogenesis

Molecular cell, 2013-05, Vol.50 (4), p.601-608

2013

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Chimira: analysis of small RNA sequencing data and microRNA modifications

Bioinformatics, 2015-10, Vol.31 (20), p.3365-3367

2015

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RNA modifications detection by comparative Nanopore direct RNA sequencing

Nature communications, 2021-12, Vol.12 (1), p.7198-17, Article 7198

2021

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Kraken: A set of tools for quality control and analysis of high-throughput sequence data

Methods (San Diego, Calif.), 2013-09, Vol.63 (1), p.41-49

2013

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The in vivo RNA structurome of the malaria parasite Plasmodium falciparum, a protozoan with an A/U-rich transcriptome

PloS one, 2022-09, Vol.17 (9), p.e0270863-e0270863

2022

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mRNA 3' uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome

Nature (London), 2017-08, Vol.548 (7667), p.347-351

2017

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A high-resolution mRNA expression time course of embryonic development in zebrafish

eLife, 2017-11, Vol.6

2017

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Extracellular Vesicles from Neural Stem Cells Transfer IFN-γ via Ifngr1 to Activate Stat1 Signaling in Target Cells

Molecular cell, 2014-10, Vol.56 (2), p.193-204

2014

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Detecting microRNA binding and siRNA off-target effects from expression data

Nature methods, 2008-12, Vol.5 (12), p.1023-1025

2008

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Human MicroRNA targets

PLoS biology, 2004-11, Vol.2 (11), p.e363-e363

2004

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Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

Genome Biology, 2018-03, Vol.19 (1), p.32-32, Article 32

2018

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Zebrafish MiR-430 Promotes Deadenylation and Clearance of Maternal mRNAs

Science (American Association for the Advancement of Science), 2006-04, Vol.312 (5770), p.75-79

2006

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The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis

Nature communications, 2019-10, Vol.10 (1), p.4513-17, Article 4513

2019

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The miR-144/451 locus is required for erythroid homeostasis

The Journal of experimental medicine, 2010-07, Vol.207 (7), p.1351-1358

2010

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Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis

Nucleic acids research, 2017-02, Vol.45 (3), p.1079-1090

2017

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Smallpox vaccination induces a substantial increase in commensal skin bacteria that promote pathology and influence the host response

PLoS pathogens, 2022-04, Vol.18 (4), p.e1009854-e1009854

2022

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Annotation of mammalian primary microRNAs

BMC genomics, 2008-11, Vol.9 (1), p.564-564, Article 564

2008

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CGG toolkit: Software components for computational genomics

PLoS computational biology, 2023-11, Vol.19 (11), p.e1011498-e1011498

2023

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Identification of Virus-Encoded MicroRNAs

Science (American Association for the Advancement of Science), 2004-04, Vol.304 (5671), p.734-736

2004

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MicroRNA-9 Inhibition of Cell Proliferation and Identification of Novel miR-9 Targets by Transcriptome Profiling in Breast Cancer Cells

The Journal of biological chemistry, 2012-08, Vol.287 (35), p.29516-29528

2012

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MicroRNAs Regulate Brain Morphogenesis in Zebrafish

Science (American Association for the Advancement of Science), 2005-05, Vol.308 (5723), p.833-838

2005

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Targeted Deletion of MicroRNA-22 Promotes Stress-Induced Cardiac Dilation and Contractile Dysfunction

Circulation (New York, N.Y.), 2012-06, Vol.125 (22), p.2751-2761

2012

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Short- and long-range cis interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis

PLoS pathogens, 2021-08, Vol.17 (8), p.e1009875

2021

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A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway

Genes & development, 2007-08, Vol.21 (16), p.1999-2004

2007

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microRNA-155 Regulates the Generation of Immunoglobulin Class-Switched Plasma Cells

Immunity (Cambridge, Mass.), 2007-12, Vol.27 (6), p.847-859

2007

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Multiple Epigenetic Mechanisms and the piRNA Pathway Enforce LINE1 Silencing during Adult Spermatogenesis

Chimira: analysis of small RNA sequencing data and microRNA modifications

RNA modifications detection by comparative Nanopore direct RNA sequencing

Kraken: A set of tools for quality control and analysis of high-throughput sequence data

The in vivo RNA structurome of the malaria parasite Plasmodium falciparum, a protozoan with an A/U-rich transcriptome

mRNA 3' uridylation and poly(A) tail length sculpt the mammalian maternal transcriptome

A high-resolution mRNA expression time course of embryonic development in zebrafish

Extracellular Vesicles from Neural Stem Cells Transfer IFN-γ via Ifngr1 to Activate Stat1 Signaling in Target Cells

Detecting microRNA binding and siRNA off-target effects from expression data

Human MicroRNA targets

Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci

Zebrafish MiR-430 Promotes Deadenylation and Clearance of Maternal mRNAs

The midbody interactome reveals unexpected roles for PP1 phosphatases in cytokinesis

The miR-144/451 locus is required for erythroid homeostasis

Large-scale analysis of microRNA expression, epi-transcriptomic features and biogenesis

Smallpox vaccination induces a substantial increase in commensal skin bacteria that promote pathology and influence the host response

Annotation of mammalian primary microRNAs

CGG toolkit: Software components for computational genomics

Identification of Virus-Encoded MicroRNAs

MicroRNA-9 Inhibition of Cell Proliferation and Identification of Novel miR-9 Targets by Transcriptome Profiling in Breast Cancer Cells

MicroRNAs Regulate Brain Morphogenesis in Zebrafish

Targeted Deletion of MicroRNA-22 Promotes Stress-Induced Cardiac Dilation and Contractile Dysfunction

Short- and long-range cis interactions between integrated HPV genomes and cellular chromatin dysregulate host gene expression in early cervical carcinogenesis

A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway

microRNA-155 Regulates the Generation of Immunoglobulin Class-Switched Plasma Cells

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