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Correlation functions, mean first passage times, and the Kemeny constant

The Journal of chemical physics, 2020-03, Vol.152 (10), p.104108-104108

2020

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Variational kinetic clustering of complex networks

The Journal of chemical physics, 2023-03, Vol.158 (10), p.104112-104112

2023

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Maximal modularity and the optimal size of parliaments

Scientific reports, 2021-07, Vol.11 (1), p.14452-14452, Article 14452

2021

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Mean first passage times in variational coarse graining using Markov state models

The Journal of chemical physics, 2019-04, Vol.150 (13), p.134107-134107

2019

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Modelling the interplay between the CD4+/CD8+ T-cell ratio and the expression of MHC-I in tumours

Journal of mathematical biology, 2021-07, Vol.83 (1), p.2-2, Article 2

2021

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Graphie: A network-based visual interface for the UK's primary legislation [version 1; peer review: 2 approved]

F1000 research, 2023, Vol.12, p.236-236

2023

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Dynamics of sparse Boolean networks with multi-node and self-interactions

Journal of physics. A, Mathematical and theoretical, 2022-10, Vol.55 (41), p.415003

2022

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Replica symmetry breaking in supervised and unsupervised Hebbian networks

Journal of physics. A, Mathematical and theoretical, 2024-04, Vol.57 (16), p.165003

2024

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Extensive parallel processing on scale-free networks

Physical review letters, 2014-12, Vol.113 (23), p.238106-238106, Article 238106

2014

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Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods

PloS one, 2010-08, Vol.5 (8), p.e12083-e12083

2010

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Limiting relaxation times from Markov state models

The Journal of chemical physics, 2018-08, Vol.149 (7), p.072324-072324

2018

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Vaccination with partial transmission and social distancing on contact networks

Journal of statistical mechanics, 2022-03, Vol.2022 (3), p.33302

2022

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Position-Dependent Diffusion from Biased Simulations and Markov State Model Analysis

Journal of chemical theory and computation, 2021-04, Vol.17 (4), p.2022-2033

2021

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Modelling the interplay between the CD4\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$^{+}$$\end{document}+/CD8\documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-

Journal of mathematical biology, 2021-01, Vol.83 (1)

2021

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Reproducing size distributions of swarms of barchan dunes on Mars and Earth using a mean-field model

Physica A, 2022-11, Vol.606, p.128042, Article 128042

2022

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Uncovering the non-equilibrium stationary properties in sparse Boolean networks

Journal of statistical mechanics, 2022-05, Vol.2022 (5), p.53303

2022

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Dynamically selected steady states and criticality in non-reciprocal networks

Chaos, solitons and fractals, 2024-05, Vol.182, p.114809, Article 114809

2024

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A dynamical model of the adaptive immune system: effects of cells promiscuity, antigens and B-B interactions

Journal of statistical mechanics, 2015-08, Vol.2015 (8), p.P08017

2015

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Percolation on the gene regulatory network

Journal of statistical mechanics, 2020-08, Vol.2020 (8), p.83501

2020

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Cell reprogramming modelled as transitions in a hierarchy of cell cycles

Journal of physics. A, Mathematical and theoretical, 2017-10, Vol.50 (42), p.425601

2017

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Exact and approximate mean first passage times on trees and other necklace structures: a local equilibrium approach

Journal of physics. A, Mathematical and theoretical, 2022-03, Vol.55 (11), p.115001

2022

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Rationalizing systematic discrepancies between election outcomes and opinion polls

Journal of statistical mechanics, 2022-12, Vol.2022 (12), p.123403

2022

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The role of idiotypic interactions in the adaptive immune system: a belief-propagation approach

Journal of statistical mechanics, 2016-08, Vol.2016 (8), p.83402

2016

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A combined model of aggregation, fragmentation, and exchange processes: insights from analytical calculations

Journal of statistical mechanics, 2021-05, Vol.2021 (5), p.53203

2021

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Information retrieval and structural complexity of legal trees

Journal of physic, complexity, 2022-09, Vol.3 (3), p.35008

2022

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Correlation functions, mean first passage times, and the Kemeny constant

Variational kinetic clustering of complex networks

Maximal modularity and the optimal size of parliaments

Mean first passage times in variational coarse graining using Markov state models

Modelling the interplay between the CD4+/CD8+ T-cell ratio and the expression of MHC-I in tumours

Graphie: A network-based visual interface for the UK's primary legislation [version 1; peer review: 2 approved]

Dynamics of sparse Boolean networks with multi-node and self-interactions

Replica symmetry breaking in supervised and unsupervised Hebbian networks

Extensive parallel processing on scale-free networks

Protein networks reveal detection bias and species consistency when analysed by information-theoretic methods

Limiting relaxation times from Markov state models

Vaccination with partial transmission and social distancing on contact networks

Position-Dependent Diffusion from Biased Simulations and Markov State Model Analysis

Reproducing size distributions of swarms of barchan dunes on Mars and Earth using a mean-field model

Uncovering the non-equilibrium stationary properties in sparse Boolean networks

Dynamically selected steady states and criticality in non-reciprocal networks

A dynamical model of the adaptive immune system: effects of cells promiscuity, antigens and B-B interactions

Percolation on the gene regulatory network

Cell reprogramming modelled as transitions in a hierarchy of cell cycles

Exact and approximate mean first passage times on trees and other necklace structures: a local equilibrium approach

Rationalizing systematic discrepancies between election outcomes and opinion polls

The role of idiotypic interactions in the adaptive immune system: a belief-propagation approach

A combined model of aggregation, fragmentation, and exchange processes: insights from analytical calculations

Information retrieval and structural complexity of legal trees

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