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Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention

Genome Biology, 2023-03, Vol.24 (1), p.53-53, Article 53

2023

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RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data

BMC bioinformatics, 2022-04, Vol.23 (1), p.142-142, Article 142

2022

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Alternative Splicing Variation: Accessing and Exploiting in Crop Improvement Programs

International journal of molecular sciences, 2023-10, Vol.24 (20), p.15205

2023

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Multiplex CRISPR Mutagenesis of the Serine/Arginine-Rich (SR) Gene Family in Rice

Genes, 2019-08, Vol.10 (8), p.596

2019

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A survey of the sorghum transcriptome using single-molecule long reads

Nature communications, 2016-06, Vol.7 (1), p.11706-11706, Article 11706

2016

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Complexity of the Alternative Splicing Landscape in Plants

The Plant cell, 2013-10, Vol.25 (10), p.3657-3683

2013

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Perspective on Alternative Splicing and Proteome Complexity in Plants

Trends in plant science, 2019-06, Vol.24 (6), p.496-506

2019

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Quantitative profiling of N6-methyladenosine at single-base resolution in stem-differentiating xylem of Populus trichocarpa using Nanopore direct RNA sequencing

Genome Biology, 2021-01, Vol.22 (1), p.1, Article 22

2021

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Development of an in vitro pre-mRNA splicing assay using plant nuclear extract

Plant methods, 2018-01, Vol.14 (1), p.1-1, Article 1

2018

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The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses

Cells (Basel, Switzerland), 2022-05, Vol.11 (11), p.1796

2022

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Comparative analysis of serine/arginine-rich proteins across 27 eukaryotes: insights into sub-family classification and extent of alternative splicing

PloS one, 2011-09, Vol.6 (9), p.e24542-e24542

2011

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Transcriptome Analysis of Drought-Resistant and Drought-Sensitive Sorghum ( Sorghum bicolor ) Genotypes in Response to PEG-Induced Drought Stress

International journal of molecular sciences, 2020-01, Vol.21 (3), p.772

2020

Volltextzugriff (PDF)

Interactions of SR45, an SR‐like protein, with spliceosomal proteins and an intronic sequence: insights into regulated splicing

The Plant journal : for cell and molecular biology, 2012-09, Vol.71 (6), p.936-947

2012

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The Landscape of RNA-Protein Interactions in Plants: Approaches and Current Status

International journal of molecular sciences, 2021-03, Vol.22 (6), p.2845

2021

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Coping with Stresses: Roles of Calcium- and Calcium/Calmodulin-Regulated Gene Expression

The Plant cell, 2011-06, Vol.23 (6), p.2010-2032

2011

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Polarized cell growth, organelle motility, and cytoskeletal organization in conifer pollen tube tips are regulated by KCBP, the calmodulin-binding kinesin

Planta, 2013-09, Vol.238 (3), p.587-597

2013

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Alternative Splicing and Protein Diversity: Plants Versus Animals

Frontiers in plant science, 2019-06, Vol.10, p.708-708

2019

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Regulation of plant developmental processes by a novel splicing factor

PloS one, 2007-05, Vol.2 (5), p.e471-e471

2007

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DNA-Binding Activity of CAMTA3 Is Essential for Its Function: Identification of Critical Amino Acids for Its Transcriptional Activity

Cells (Basel, Switzerland), 2023-08, Vol.12 (15), p.1986

2023

Volltextzugriff (PDF)

Stress-Induced Changes in Alternative Splicing Landscape in Rice: Functional Significance of Splice Isoforms in Stress Tolerance

Biology (Basel, Switzerland), 2021-04, Vol.10 (4), p.309

2021

Volltextzugriff (PDF)

Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses

The Plant journal : for cell and molecular biology, 2007-03, Vol.49 (6), p.1091-1107

2007

Volltextzugriff (PDF)

Analysis of Transcriptome and Epitranscriptome in Plants Using PacBio Iso-Seq and Nanopore-Based Direct RNA Sequencing

Frontiers in genetics, 2019-03, Vol.10, p.253-253

2019

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Overlapping roles of spliceosomal components SF3B1 and PHF5A in rice splicing regulation

Communications biology, 2021-05, Vol.4 (1), p.529-529, Article 529

2021

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Alternative Splicing of Pre-Messenger RNAs in Plants in the Genomic Era

Annual review of plant biology, 2007-01, Vol.58 (1), p.267-294

Reddy, A.S.N

2007

Volltextzugriff (PDF)

Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching

Frontiers in plant science, 2018-02, Vol.9, p.5-5

2018

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Evidence for the role of transcription factors in the co-transcriptional regulation of intron retention

RODAN: a fully convolutional architecture for basecalling nanopore RNA sequencing data

Alternative Splicing Variation: Accessing and Exploiting in Crop Improvement Programs

Multiplex CRISPR Mutagenesis of the Serine/Arginine-Rich (SR) Gene Family in Rice

A survey of the sorghum transcriptome using single-molecule long reads

Complexity of the Alternative Splicing Landscape in Plants

Perspective on Alternative Splicing and Proteome Complexity in Plants

Quantitative profiling of N6-methyladenosine at single-base resolution in stem-differentiating xylem of Populus trichocarpa using Nanopore direct RNA sequencing

Development of an in vitro pre-mRNA splicing assay using plant nuclear extract

The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses

Comparative analysis of serine/arginine-rich proteins across 27 eukaryotes: insights into sub-family classification and extent of alternative splicing

Transcriptome Analysis of Drought-Resistant and Drought-Sensitive Sorghum ( Sorghum bicolor ) Genotypes in Response to PEG-Induced Drought Stress

Interactions of SR45, an SR‐like protein, with spliceosomal proteins and an intronic sequence: insights into regulated splicing

The Landscape of RNA-Protein Interactions in Plants: Approaches and Current Status

Coping with Stresses: Roles of Calcium- and Calcium/Calmodulin-Regulated Gene Expression

Polarized cell growth, organelle motility, and cytoskeletal organization in conifer pollen tube tips are regulated by KCBP, the calmodulin-binding kinesin

Alternative Splicing and Protein Diversity: Plants Versus Animals

Regulation of plant developmental processes by a novel splicing factor

DNA-Binding Activity of CAMTA3 Is Essential for Its Function: Identification of Critical Amino Acids for Its Transcriptional Activity

Stress-Induced Changes in Alternative Splicing Landscape in Rice: Functional Significance of Splice Isoforms in Stress Tolerance

Alternative splicing of pre-mRNAs of Arabidopsis serine/arginine-rich proteins: regulation by hormones and stresses

Analysis of Transcriptome and Epitranscriptome in Plants Using PacBio Iso-Seq and Nanopore-Based Direct RNA Sequencing

Overlapping roles of spliceosomal components SF3B1 and PHF5A in rice splicing regulation

Alternative Splicing of Pre-Messenger RNAs in Plants in the Genomic Era

Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching

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