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Building Water Models: A Different Approach

The journal of physical chemistry letters, 2014-11, Vol.5 (21), p.3863-3871

2014

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Speed of Conformational Change: Comparing Explicit and Implicit Solvent Molecular Dynamics Simulations

Biophysical journal, 2015-03, Vol.108 (5), p.1153-1164

2015

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A partition function approximation using elementary symmetric functions

PloS one, 2012-12, Vol.7 (12), p.e51352-e51352

2012

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An approach for developing a blood-based screening panel for lung cancer based on clonal hematopoietic mutations

PloS one, 2024-08, Vol.19 (8), p.e0307232

2024

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Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations

PLoS computational biology, 2019-03, Vol.15 (3), p.e1006881

2019

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Analytic approaches to clinical validation of results from preclinical models of glioblastoma: A systematic review

PloS one, 2022-03, Vol.17 (3), p.e0264740-e0264740

2022

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Potential immunosuppressive clonal hematopoietic mutations in tumor infiltrating immune cells in breast invasive carcinoma

Scientific reports, 2023-08, Vol.13 (1), p.13131-13131, Article 13131

2023

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Crossing complexity of space-filling curves reveals entanglement of S-phase DNA

PloS one, 2020-08, Vol.15 (8), p.e0238322-e0238322

2020

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Modulation of nucleosomal DNA accessibility via charge-altering post-translational modifications in histone core

Epigenetics & chromatin, 2018-03, Vol.11 (1), p.11-11, Article 11

2018

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Biophysical comparison of ATP-driven proton pumping mechanisms suggests a kinetic advantage for the rotary process depending on coupling ratio

PloS one, 2017-03, Vol.12 (3), p.e0173500-e0173500

2017

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Differentiating between cancer and normal tissue samples using multi-hit combinations of genetic mutations

Scientific reports, 2019-01, Vol.9 (1), p.1005, Article 1005

2019

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Identifying multi-hit carcinogenic gene combinations: Scaling up a weighted set cover algorithm using compressed binary matrix representation on a GPU

Scientific reports, 2020-02, Vol.10 (1), p.2022, Article 2022

2020

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Ethnically biased microsatellites contribute to differential gene expression and glutathione metabolism in Africans and Europeans

PloS one, 2021-03, Vol.16 (3), p.e0249148-e0249148

2021

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CAGm: a repository of germline microsatellite variations in the 1000 genomes project

Nucleic acids research, 2019-01, Vol.47 (D1), p.D39-D45

2019

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Abundance of ethnically biased microsatellites in human gene regions

PloS one, 2019-12, Vol.14 (12), p.e0225216

2019

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Point charges optimally placed to represent the multipole expansion of charge distributions

PloS one, 2013-07, Vol.8 (7), p.e67715-e67715

2013

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Multiple germline sequence variants with potential cancer risk uncovered by exome sequencing in an anatomic lab donor cadaver with multiple cancer lesions

Human Pathology Reports, 2024-09, Vol.37, p.300754, Article 300754

2024

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Analysis of basic clustering algorithms for numerical estimation of statistical averages in biomolecules

Journal of computational biology, 2008-03, Vol.15 (2), p.165-184

2008

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DNA sequencing of anatomy lab cadavers to provide hands-on precision medicine introduction to medical students

BMC medical education, 2020-11, Vol.20 (1), p.437-437, Article 437

2020

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Functional bias in molecular evolution rate of Arabidopsis thaliana

BMC evolutionary biology, 2010-05, Vol.10 (1), p.125, Article 125

2010

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Application of Machine Learning Method in Genomics and Proteomics

TheScientificWorld, 2015, Vol.2015 (1), p.914780-914780

2015

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H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations

Nucleic acids research, 2012-07, Vol.40 (Web Server issue), p.W537-W541

2012

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Briefing in Application of Machine Learning Methods in Ion Channel Prediction

TheScientificWorld, 2015, Vol.2015 (1), p.945927-945927

2015

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ZDHHC3 as a Risk and Mortality Marker for Breast Cancer in African American Women

Cancer informatics, 2017, Vol.16, p.1176935117746644-1176935117746644

2017

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Why Computed Protein Folding Landscapes Are Sensitive to the Water Model

Journal of chemical theory and computation, 2019-01, Vol.15 (1), p.625-636

2019

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Building Water Models: A Different Approach

Speed of Conformational Change: Comparing Explicit and Implicit Solvent Molecular Dynamics Simulations

A partition function approximation using elementary symmetric functions

An approach for developing a blood-based screening panel for lung cancer based on clonal hematopoietic mutations

Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations

Analytic approaches to clinical validation of results from preclinical models of glioblastoma: A systematic review

Potential immunosuppressive clonal hematopoietic mutations in tumor infiltrating immune cells in breast invasive carcinoma

Crossing complexity of space-filling curves reveals entanglement of S-phase DNA

Modulation of nucleosomal DNA accessibility via charge-altering post-translational modifications in histone core

Biophysical comparison of ATP-driven proton pumping mechanisms suggests a kinetic advantage for the rotary process depending on coupling ratio

Differentiating between cancer and normal tissue samples using multi-hit combinations of genetic mutations

Identifying multi-hit carcinogenic gene combinations: Scaling up a weighted set cover algorithm using compressed binary matrix representation on a GPU

Ethnically biased microsatellites contribute to differential gene expression and glutathione metabolism in Africans and Europeans

CAGm: a repository of germline microsatellite variations in the 1000 genomes project

Abundance of ethnically biased microsatellites in human gene regions

Point charges optimally placed to represent the multipole expansion of charge distributions

Multiple germline sequence variants with potential cancer risk uncovered by exome sequencing in an anatomic lab donor cadaver with multiple cancer lesions

Analysis of basic clustering algorithms for numerical estimation of statistical averages in biomolecules

DNA sequencing of anatomy lab cadavers to provide hands-on precision medicine introduction to medical students

Functional bias in molecular evolution rate of Arabidopsis thaliana

Application of Machine Learning Method in Genomics and Proteomics

H++ 3.0: automating pK prediction and the preparation of biomolecular structures for atomistic molecular modeling and simulations

Briefing in Application of Machine Learning Methods in Ion Channel Prediction

ZDHHC3 as a Risk and Mortality Marker for Breast Cancer in African American Women

Why Computed Protein Folding Landscapes Are Sensitive to the Water Model

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