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Phylogenetic Trees and Networks Can Serve as Powerful and Complementary Approaches for Analysis of Genomic Data

Systematic biology, 2020-05, Vol.69 (3), p.593-601

2020

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Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting

PLoS genetics, 2016-03, Vol.12 (3), p.e1005896-e1005896

2016

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TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT EVOLUTION USING LIKELIHOOD

Evolution, 2006-05, Vol.60 (5), p.922-933

2006

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PhyloNetworks: A Package for Phylogenetic Networks

Molecular biology and evolution, 2017-12, Vol.34 (12), p.3292-3298

2017

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A Linear-Time Algorithm for Gaussian and Non-Gaussian Trait Evolution Models

Systematic biology, 2014-05, Vol.63 (3), p.397-408

2014

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Fast and accurate detection of evolutionary shifts in Ornstein–Uhlenbeck models

Methods in ecology and evolution, 2016-07, Vol.7 (7), p.811-824

2016

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Rphylopars: fast multivariate phylogenetic comparative methods for missing data and within‐species variation

Methods in ecology and evolution, 2017-01, Vol.8 (1), p.22-27

2017

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Assessing the fit of the multi-species network coalescent to multi-locus data

Bioinformatics, 2021-05, Vol.37 (5), p.634-641

2021

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Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies

Systematic biology, 2008-08, Vol.57 (4), p.613-627

2008

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Correction: Using HSV-1 Genome Phylogenetics to Track Past Human Migrations

PloS one, 2019-05, Vol.14 (5), p.e0217890-e0217890

2019

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Identifiability of local and global features of phylogenetic networks from average distances

Journal of mathematical biology, 2023-01, Vol.86 (1), p.12-12, Article 12

2023

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Summary Tests of Introgression Are Highly Sensitive to Rate Variation Across Lineages

Systematic biology, 2023-12, Vol.72 (6), p.1357-1369

2023

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Intrinsic inference difficulties for trait evolution with Ornstein‐Uhlenbeck models

Methods in ecology and evolution, 2014-11, Vol.5 (11), p.1133-1146

2014

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Inference of Adaptive Shifts for Multivariate Correlated Traits

Systematic biology, 2018-07, Vol.67 (4), p.662-680

2018

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BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

Bioinformatics, 2010-11, Vol.26 (22), p.2910-2911

2010

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Inconsistency of Species Tree Methods under Gene Flow

Systematic biology, 2016-09, Vol.65 (5), p.843-851

2016

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KIMGENS: a novel method to estimate kinship in organisms with mixed haploid diploid genetic systems robust to population structure

Bioinformatics, 2022-05, Vol.38 (11), p.3044-3050

2022

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Comparing Two Bayesian Methods for Gene Tree/Species Tree Reconstruction: Simulations with Incomplete Lineage Sorting and Horizontal Gene Transfer

Systematic biology, 2011-05, Vol.60 (3), p.261-275

2011

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LOCATING EVOLUTIONARY PRECURSORS ON A PHYLOGENETIC TREE

Evolution, 2012-12, Vol.66 (12), p.3918-3930

2012

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Detecting and locating whole genome duplications on a phylogeny: a probabilistic approach

Molecular biology and evolution, 2014-03, Vol.31 (3), p.750-762

2014

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Optimal Selection of Gene and Ingroup Taxon Sampling for Resolving Phylogenetic Relationships

Systematic biology, 2010-07, Vol.59 (4), p.446-457

2010

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PhyloCoalSimulations: A Simulator for Network Multispecies Coalescent Models, Including a New Extension for the Inheritance of Gene Flow

Systematic biology, 2023-11, Vol.72 (5), p.1171-1179

2023

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Bayesian species delimitation combining multiple genes and traits in a unified framework

Evolution, 2015-02, Vol.69 (2), p.492-507

2015

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Ecophysiological adaptations shape distributions of closely related trees along a climatic moisture gradient

Nature communications, 2023-11, Vol.14 (1), p.7173-7173, Article 7173

2023

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Predictive factors of reading in children with developmental language disorder

Journal of experimental child psychology, 2024-11, Vol.247, p.106042, Article 106042

2024

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Phylogenetic Trees and Networks Can Serve as Powerful and Complementary Approaches for Analysis of Genomic Data

Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting

TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT EVOLUTION USING LIKELIHOOD

PhyloNetworks: A Package for Phylogenetic Networks

A Linear-Time Algorithm for Gaussian and Non-Gaussian Trait Evolution Models

Fast and accurate detection of evolutionary shifts in Ornstein–Uhlenbeck models

Rphylopars: fast multivariate phylogenetic comparative methods for missing data and within‐species variation

Assessing the fit of the multi-species network coalescent to multi-locus data

Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies

Correction: Using HSV-1 Genome Phylogenetics to Track Past Human Migrations

Identifiability of local and global features of phylogenetic networks from average distances

Summary Tests of Introgression Are Highly Sensitive to Rate Variation Across Lineages

Intrinsic inference difficulties for trait evolution with Ornstein‐Uhlenbeck models

Inference of Adaptive Shifts for Multivariate Correlated Traits

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

Inconsistency of Species Tree Methods under Gene Flow

KIMGENS: a novel method to estimate kinship in organisms with mixed haploid diploid genetic systems robust to population structure

Comparing Two Bayesian Methods for Gene Tree/Species Tree Reconstruction: Simulations with Incomplete Lineage Sorting and Horizontal Gene Transfer

LOCATING EVOLUTIONARY PRECURSORS ON A PHYLOGENETIC TREE

Detecting and locating whole genome duplications on a phylogeny: a probabilistic approach

Optimal Selection of Gene and Ingroup Taxon Sampling for Resolving Phylogenetic Relationships

PhyloCoalSimulations: A Simulator for Network Multispecies Coalescent Models, Including a New Extension for the Inheritance of Gene Flow

Bayesian species delimitation combining multiple genes and traits in a unified framework

Ecophysiological adaptations shape distributions of closely related trees along a climatic moisture gradient

Predictive factors of reading in children with developmental language disorder

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