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An archaeal histone-like protein regulates gene expression in response to salt stress

Nucleic acids research, 2021-12, Vol.49 (22), p.12732-12743

2021

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Clustering gene expression time series data using an infinite Gaussian process mixture model

PLoS computational biology, 2018-01, Vol.14 (1), p.e1005896

2018

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A conserved transcription factor controls gluconeogenesis via distinct targets in hypersaline-adapted archaea with diverse metabolic capabilities

PLoS genetics, 2024-01, Vol.20 (1), p.e1011115-e1011115

2024

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Genome-Wide Assessment of Outer Membrane Vesicle Production in Escherichia coli

PloS one, 2015-09, Vol.10 (9), p.e0139200-e0139200

2015

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TroR is the primary regulator of the iron homeostasis transcription network in the halophilic archaeon Haloferax volcanii

Nucleic acids research, 2024-01, Vol.52 (1), p.125-140

2024

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The Hypersaline Archaeal Histones HpyA and HstA Are DNA Binding Proteins That Defy Categorization According to Commonly Used Functional Criteria

mBio, 2023-04, Vol.14 (2), p.e0344922-e0344922

2023

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N -Glycosylation Is Important for Halobacterium salinarum Archaellin Expression, Archaellum Assembly and Cell Motility

Frontiers in microbiology, 2019-06, Vol.10, p.1367-1367

2019

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Synergistic Impacts of Organic Acids and pH on Growth of Pseudomonas aeruginosa : A Comparison of Parametric and Bayesian Non-parametric Methods to Model Growth

Frontiers in microbiology, 2019-01, Vol.9, p.3196-3196

2019

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A Bayesian non-parametric mixed-effects model of microbial growth curves

PLoS computational biology, 2020-10, Vol.16 (10), p.e1008366-e1008366

2020

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Comparative Analysis of rRNA Removal Methods for RNA-Seq Differential Expression in Halophilic Archaea

Biomolecules (Basel, Switzerland), 2022-05, Vol.12 (5), p.682

2022

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SnapShot: Microbial Extremophiles

Cell, 2020-02, Vol.180 (4), p.818-818.e1

2020

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A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell

Cell, 2007-12, Vol.131 (7), p.1354-1365

2007

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Gene Expression of Haloferax volcanii on Intermediate and Abundant Sources of Fixed Nitrogen

International journal of molecular sciences, 2019-09, Vol.20 (19), p.4784

2019

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Dynamic Metabolite Profiling in an Archaeon Connects Transcriptional Regulation to Metabolic Consequences

PloS one, 2015-08, Vol.10 (8), p.e0135693-e0135693

2015

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Growth-Phase-Specific Modulation of Cell Morphology and Gene Expression by an Archaeal Histone Protein

mBio, 2015-09, Vol.6 (5), p.e00649-e00615

2015

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A regulatory hierarchy controls the dynamic transcriptional response to extreme oxidative stress in archaea

PLoS genetics, 2015-01, Vol.11 (1), p.e1004912-e1004912

2015

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Global Transcriptional Programs in Archaea Share Features with the Eukaryotic Environmental Stress Response

Journal of molecular biology, 2019-09, Vol.431 (20), p.4147-4166

2019

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Systematic Discovery of Archaeal Transcription Factor Functions in Regulatory Networks through Quantitative Phenotyping Analysis

mSystems, 2017-09, Vol.2 (5)

2017

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Detecting differential growth of microbial populations with Gaussian process regression

Genome research, 2017-02, Vol.27 (2), p.320-333

2017

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Halofilins as emerging bactofilin families of archaeal cell shape plasticity orchestrators

Proceedings of the National Academy of Sciences - PNAS, 2024-10, Vol.121 (40), p.e2401583121

2024

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Transcriptional Regulation in Archaea: From Individual Genes to Global Regulatory Networks

Annual review of genetics, 2017-11, Vol.51 (1), p.143-170

2017

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TbsP and TrmB jointly regulate gapII to influence cell development phenotypes in the archaeon Haloferax volcanii

Molecular microbiology, 2024-04, Vol.121 (4), p.742-766

2024

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The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications

BMC bioinformatics, 2007-11, Vol.8 (1), p.456-456, Article 456

2007

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Conserved principles of transcriptional networks controlling metabolic flexibility in archaea

Emerging topics in life sciences, 2018-12, Vol.2 (4), p.659-669

2018

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Systems biology approaches to defining transcription regulatory networks in halophilic archaea

Methods (San Diego, Calif.), 2015-09, Vol.86, p.102-114

2015

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An archaeal histone-like protein regulates gene expression in response to salt stress

Clustering gene expression time series data using an infinite Gaussian process mixture model

A conserved transcription factor controls gluconeogenesis via distinct targets in hypersaline-adapted archaea with diverse metabolic capabilities

Genome-Wide Assessment of Outer Membrane Vesicle Production in Escherichia coli

TroR is the primary regulator of the iron homeostasis transcription network in the halophilic archaeon Haloferax volcanii

The Hypersaline Archaeal Histones HpyA and HstA Are DNA Binding Proteins That Defy Categorization According to Commonly Used Functional Criteria

N -Glycosylation Is Important for Halobacterium salinarum Archaellin Expression, Archaellum Assembly and Cell Motility

Synergistic Impacts of Organic Acids and pH on Growth of Pseudomonas aeruginosa : A Comparison of Parametric and Bayesian Non-parametric Methods to Model Growth

A Bayesian non-parametric mixed-effects model of microbial growth curves

Comparative Analysis of rRNA Removal Methods for RNA-Seq Differential Expression in Halophilic Archaea

SnapShot: Microbial Extremophiles

A Predictive Model for Transcriptional Control of Physiology in a Free Living Cell

Gene Expression of Haloferax volcanii on Intermediate and Abundant Sources of Fixed Nitrogen

Dynamic Metabolite Profiling in an Archaeon Connects Transcriptional Regulation to Metabolic Consequences

Growth-Phase-Specific Modulation of Cell Morphology and Gene Expression by an Archaeal Histone Protein

A regulatory hierarchy controls the dynamic transcriptional response to extreme oxidative stress in archaea

Global Transcriptional Programs in Archaea Share Features with the Eukaryotic Environmental Stress Response

Systematic Discovery of Archaeal Transcription Factor Functions in Regulatory Networks through Quantitative Phenotyping Analysis

Detecting differential growth of microbial populations with Gaussian process regression

Halofilins as emerging bactofilin families of archaeal cell shape plasticity orchestrators

Transcriptional Regulation in Archaea: From Individual Genes to Global Regulatory Networks

TbsP and TrmB jointly regulate gapII to influence cell development phenotypes in the archaeon Haloferax volcanii

The Firegoose: two-way integration of diverse data from different bioinformatics web resources with desktop applications

Conserved principles of transcriptional networks controlling metabolic flexibility in archaea

Systems biology approaches to defining transcription regulatory networks in halophilic archaea

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