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Predicting the oxidation states of Mn ions in the oxygen-evolving complex of photosystem II using supervised and unsupervised machine learning

Photosynthesis research, 2023-04, Vol.156 (1), p.89-100

Amin, Muhamed

2023

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Comparing the Binding Interactions in the Receptor Binding Domains of SARS-CoV‑2 and SARS-CoV

The journal of physical chemistry letters, 2020-06, Vol.11 (12), p.4897-4900

2020

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The new SARS-CoV-2 strain shows a stronger binding affinity to ACE2 due to N501Y mutant

Medicine in drug discovery, 2021-06, Vol.10, p.100086-100086, Article 100086

2021

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Variations in Proteins Dielectric Constants

ChemistryOpen (Weinheim), 2020-06, Vol.9 (6), p.691-694

2020

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The Delta variant mutations in the receptor binding domain of SARS-CoV-2 show enhanced electrostatic interactions with the ACE2

Medicine in drug discovery, 2022-03, Vol.13, p.100114, Article 100114

2022

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Toward understanding the S2-S3 transition in the Kok cycle of Photosystem II: Lessons from Sr-substituted structure

Inorganic chemistry communications, 2021-11, Vol.133 (C), p.108890, Article 108890

2021

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Radiation Damage in XFEL: Case study from the oxygen-evolving complex of Photosystem II

Scientific reports, 2016-11, Vol.6 (1), p.36492-36492, Article 36492

2016

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Thermodynamics of the S2-to-S3 state transition of the oxygen-evolving complex of photosystem II

Physical chemistry chemical physics : PCCP, 2019, Vol.21 (37), p.20840-20848

2019

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Computational Approach for Probing Redox Potential for Iron-Sulfur Clusters in Photosystem I

Biology (Basel, Switzerland), 2022-02, Vol.11 (3), p.362

2022

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ACE2 coding variants in different populations and their potential impact on SARS-CoV-2 binding affinity

Biochemistry and biophysics reports, 2020-12, Vol.24, p.100798-100798, Article 100798

2020

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Effect of Chloride Depletion on the Magnetic Properties and the Redox Leveling of the Oxygen-Evolving Complex in Photosystem II

The journal of physical chemistry. B, 2016-05, Vol.120 (18), p.4243-4248

2016

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Relative stability of the S2 isomers of the oxygen evolving complex of photosystem II

Photosynthesis research, 2019-09, Vol.141 (3), p.331-341

2019

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Controlled beams of shock-frozen, isolated, biological and artificial nanoparticles

Structural dynamics (Melville, N.Y.), 2020-03, Vol.7 (2), p.024304-024304

2020

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The oxidation of the 4Fe-4S cluster of DNA primase alters the binding energies with DNA and RNA primers

Biophysical journal, 2024-06, Vol.123 (12), p.1648

2024

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Electrostatic Effects on Proton Coupled Electron Transfer in Oxomanganese Complexes Inspired by the Oxygen-Evolving Complex of Photosystem II

The journal of physical chemistry. B, 2013-05, Vol.117 (20), p.6217-6226

2013

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Quantum Effects In Imaging Nano-Structures Using Photon-Induced Near-Field Electron Microscopy

Scientific reports, 2019-04, Vol.9 (1), p.6139-6139, Article 6139

2019

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Cryo-EM structure of a tetrameric photosystem I from Chroococcidiopsis TS-821, a thermophilic, unicellular, non-heterocyst-forming cyanobacterium

Plant communications, 2022-01, Vol.3 (1), p.100248-100248, Article 100248

2022

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The oxidation of the [4Fe-4S] cluster of DNA primase alters the binding energies with DNA and RNA primers

Biophysical journal, 2024-06, Vol.123 (12), p.1648-1653

2024

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Robust and Accurate Computational Estimation of the Polarizability Tensors of Macromolecules

The journal of physical chemistry letters, 2019-06, Vol.10 (11), p.2938-2943

2019

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CMInject: Python framework for the numerical simulation of nanoparticle injection pipelines

Computer physics communications, 2022-01, Vol.270, p.108138, Article 108138

2022

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Mapping the Oxygens in the Oxygen-Evolving Complex of Photosystem II by Their Nucleophilicity Using Quantum Descriptors

Journal of chemical theory and computation, 2024-02, Vol.20 (3), p.1414-1422

2024

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Ionizing radiation induces cross-linking of two noncovalently bound collagen mimetic peptide triple helices in the absence of a molecular environment

Physical chemistry chemical physics : PCCP, 2023-11, Vol.25 (42), p.29249-29256

2023

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IL-15 gene mutation as a molecular risk factor in acute lymphoblastic leukemia

Cellular and Molecular Biology, 2024-05, Vol.70 (5), p.10-17

2024

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Welcome to Europe! Linking the EU Parliament LUX Film Prize and the impact of migration films to the emergence of a European public sphere

Journal of European popular culture, 2015-10, Vol.6 (2), p.129-144

Amin, Muhamed

2015

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Bridging the Coordination Chemistry of Small Compounds and Metalloproteins Using Machine Learning

Journal of chemical information and modeling, 2024-04, Vol.64 (7), p.2586-2593

2024

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Predicting the oxidation states of Mn ions in the oxygen-evolving complex of photosystem II using supervised and unsupervised machine learning

Comparing the Binding Interactions in the Receptor Binding Domains of SARS-CoV‑2 and SARS-CoV

The new SARS-CoV-2 strain shows a stronger binding affinity to ACE2 due to N501Y mutant

Variations in Proteins Dielectric Constants

The Delta variant mutations in the receptor binding domain of SARS-CoV-2 show enhanced electrostatic interactions with the ACE2

Toward understanding the S2-S3 transition in the Kok cycle of Photosystem II: Lessons from Sr-substituted structure

Radiation Damage in XFEL: Case study from the oxygen-evolving complex of Photosystem II

Thermodynamics of the S2-to-S3 state transition of the oxygen-evolving complex of photosystem II

Computational Approach for Probing Redox Potential for Iron-Sulfur Clusters in Photosystem I

ACE2 coding variants in different populations and their potential impact on SARS-CoV-2 binding affinity

Effect of Chloride Depletion on the Magnetic Properties and the Redox Leveling of the Oxygen-Evolving Complex in Photosystem II

Relative stability of the S2 isomers of the oxygen evolving complex of photosystem II

Controlled beams of shock-frozen, isolated, biological and artificial nanoparticles

The oxidation of the 4Fe-4S cluster of DNA primase alters the binding energies with DNA and RNA primers

Electrostatic Effects on Proton Coupled Electron Transfer in Oxomanganese Complexes Inspired by the Oxygen-Evolving Complex of Photosystem II

Quantum Effects In Imaging Nano-Structures Using Photon-Induced Near-Field Electron Microscopy

Cryo-EM structure of a tetrameric photosystem I from Chroococcidiopsis TS-821, a thermophilic, unicellular, non-heterocyst-forming cyanobacterium

The oxidation of the [4Fe-4S] cluster of DNA primase alters the binding energies with DNA and RNA primers

Robust and Accurate Computational Estimation of the Polarizability Tensors of Macromolecules

CMInject: Python framework for the numerical simulation of nanoparticle injection pipelines

Mapping the Oxygens in the Oxygen-Evolving Complex of Photosystem II by Their Nucleophilicity Using Quantum Descriptors

Ionizing radiation induces cross-linking of two noncovalently bound collagen mimetic peptide triple helices in the absence of a molecular environment

IL-15 gene mutation as a molecular risk factor in acute lymphoblastic leukemia

Welcome to Europe! Linking the EU Parliament LUX Film Prize and the impact of migration films to the emergence of a European public sphere

Bridging the Coordination Chemistry of Small Compounds and Metalloproteins Using Machine Learning

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