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N‐glycoproteins exhibit a positive expression level–evolutionary rate correlation

Journal of evolutionary biology, 2019-04, Vol.32 (4), p.390-394

2019

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Emerging Priorities for Microbiome Research

Frontiers in microbiology, 2020-02, Vol.11, p.136-136

2020

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The relationship between the hierarchical position of proteins in the human signal transduction network and their rate of evolution

BMC evolutionary biology, 2012-09, Vol.12, p.192

Alvarez-Ponce, David

2012

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Phylogenetic Distribution of CMP-Neu5Ac Hydroxylase (CMAH), the Enzyme Synthetizing the Proinflammatory Human Xenoantigen Neu5Gc

Genome biology and evolution, 2018-01, Vol.10 (1), p.207-219

2018

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Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

Proceedings of the National Academy of Sciences - PNAS, 2010-07, Vol.107 (27), p.12168-12173

2010

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Molecular evolution of DNMT1 in vertebrates: Duplications in marsupials followed by positive selection

PloS one, 2018-04, Vol.13 (4), p.e0195162

2018

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Gene similarity networks provide tools for understanding eukaryote origins and evolution

Proceedings of the National Academy of Sciences - PNAS, 2013-04, Vol.110 (17), p.E1594-E1603

2013

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Mycoplasma agassizii, an opportunistic pathogen of tortoises, shows very little genetic variation across the Mojave and Sonoran Deserts

PloS one, 2021-02, Vol.16 (2), p.e0245895

2021

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Assessing spatial distribution, genetic variants, and virulence of pathogen Mycoplasma agassizii in threatened Mojave desert tortoises

Ecology and evolution, 2023-06, Vol.13 (6), p.e10173-n/a

2023

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What lies beneath? Molecular evolution during the radiation of caecilian amphibians

BMC genomics, 2019-05, Vol.20 (1), p.354-13, Article 354

2019

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The Molecular Chaperone DnaK Is a Source of Mutational Robustness

Genome biology and evolution, 2016-09, Vol.8 (9), p.2979-2991

2016

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Evolutionary rate and duplicability in the Arabidopsis thaliana protein-protein interaction network

Genome biology and evolution, 2012-01, Vol.4 (12), p.1263-1274

2012

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Arabidopsis Heat Stress-Induced Proteins Are Enriched in Electrostatically Charged Amino Acids and Intrinsically Disordered Regions

International journal of molecular sciences, 2018-08, Vol.19 (8), p.2276

2018

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Comment on ＂The Molecular Evolutionary Patterns of the Insulin/FOXO Signaling Pathway

Evolutionary Bioinformatics, 2013-01, Vol.2013 (2013), p.229-234

2013

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Richard Dickerson, Molecular Clocks, and Rates of Protein Evolution

Journal of molecular evolution, 2021-04, Vol.89 (3), p.122-126

Alvarez-Ponce, David

2021

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Disulfide Bonds Enable Accelerated Protein Evolution

Molecular biology and evolution, 2017-08, Vol.34 (8), p.1833-1837

2017

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The Codon Statistics Database: A Database of Codon Usage Bias

Molecular biology and evolution, 2022-08, Vol.39 (8)

2022

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Extracellular Domains of Transmembrane Proteins Defy the Expression Level–Evolutionary Rate Anticorrelation

Genome biology and evolution, 2022-01, Vol.14 (1)

2022

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Recording negative results of protein-protein interaction assays: an easy way to deal with the biases and errors of interactomic data sets

Briefings in bioinformatics, 2017-11, Vol.18 (6), p.1017-1020

Alvarez-Ponce, David

2017

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Position Matters: Network Centrality Considerably Impacts Rates of Protein Evolution in the Human Protein-Protein Interaction Network

Genome biology and evolution, 2017-06, Vol.9 (6), p.1742-1756

2017

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Recent positive selection has acted on genes encoding proteins with more interactions within the whole human interactome

Genome biology and evolution, 2015-04, Vol.7 (4), p.1141-1154

2015

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Network-level and population genetics analysis of the insulin/TOR signal transduction pathway across human populations

Molecular biology and evolution, 2012-05, Vol.29 (5), p.1379-1392

2012

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Positive Selection and Centrality in the Yeast and Fly Protein-Protein Interaction Networks

BioMed research international, 2016-01, Vol.2016, p.4658506-12

2016

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Mammals with Small Populations Do Not Exhibit Larger Genomes

Molecular biology and evolution, 2021-09, Vol.38 (9), p.3737-3741

2021

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Intrinsic protein disorder reduces small-scale gene duplicability

DNA research, 2017-08, Vol.24 (4), p.435-444

2017

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N‐glycoproteins exhibit a positive expression level–evolutionary rate correlation

Emerging Priorities for Microbiome Research

The relationship between the hierarchical position of proteins in the human signal transduction network and their rate of evolution

Phylogenetic Distribution of CMP-Neu5Ac Hydroxylase (CMAH), the Enzyme Synthetizing the Proinflammatory Human Xenoantigen Neu5Gc

Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle

Molecular evolution of DNMT1 in vertebrates: Duplications in marsupials followed by positive selection

Gene similarity networks provide tools for understanding eukaryote origins and evolution

Mycoplasma agassizii, an opportunistic pathogen of tortoises, shows very little genetic variation across the Mojave and Sonoran Deserts

Assessing spatial distribution, genetic variants, and virulence of pathogen Mycoplasma agassizii in threatened Mojave desert tortoises

What lies beneath? Molecular evolution during the radiation of caecilian amphibians

The Molecular Chaperone DnaK Is a Source of Mutational Robustness

Evolutionary rate and duplicability in the Arabidopsis thaliana protein-protein interaction network

Arabidopsis Heat Stress-Induced Proteins Are Enriched in Electrostatically Charged Amino Acids and Intrinsically Disordered Regions

Comment on ＂The Molecular Evolutionary Patterns of the Insulin/FOXO Signaling Pathway

Richard Dickerson, Molecular Clocks, and Rates of Protein Evolution

Disulfide Bonds Enable Accelerated Protein Evolution

The Codon Statistics Database: A Database of Codon Usage Bias

Extracellular Domains of Transmembrane Proteins Defy the Expression Level–Evolutionary Rate Anticorrelation

Recording negative results of protein-protein interaction assays: an easy way to deal with the biases and errors of interactomic data sets

Position Matters: Network Centrality Considerably Impacts Rates of Protein Evolution in the Human Protein-Protein Interaction Network

Recent positive selection has acted on genes encoding proteins with more interactions within the whole human interactome

Network-level and population genetics analysis of the insulin/TOR signal transduction pathway across human populations

Positive Selection and Centrality in the Yeast and Fly Protein-Protein Interaction Networks

Mammals with Small Populations Do Not Exhibit Larger Genomes

Intrinsic protein disorder reduces small-scale gene duplicability

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