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DeepCoil-a fast and accurate prediction of coiled-coil domains in protein sequences

Bioinformatics (Oxford, England), 2019-08, Vol.35 (16), p.2790-2795

2019

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The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis

Nucleic acids research, 2016-07, Vol.44 (W1), p.W410-W415

2016

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The TULIP superfamily of eukaryotic lipid-binding proteins as a mediator of lipid sensing and transport

Biochimica et biophysica acta, 2016-08, Vol.1861 (8), p.913-923

2016

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Protein Sequence Analysis Using the MPI Bioinformatics Toolkit

Current Protocols in Bioinformatics, 2020-12, Vol.72 (1), p.e108-n/a

2020

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A vocabulary of ancient peptides at the origin of folded proteins

eLife, 2015-12, Vol.4, p.e09410-e09410

2015

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A multidomain connector links the outer membrane and cell wall in phylogenetically deep-branching bacteria

Proceedings of the National Academy of Sciences - PNAS, 2022-08, Vol.119 (33), p.e2203156119-e2203156119

2022

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Homology of SMP domains to the TULIP superfamily of lipid-binding proteins provides a structural basis for lipid exchange between ER and mitochondria

Bioinformatics, 2010-08, Vol.26 (16), p.1927-1931

2010

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From cyanobacteria to plants: conservation of PII functions during plastid evolution

Planta, 2013-02, Vol.237 (2), p.451-462

2013

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Multiple C2 domains and transmembrane region proteins ( MCTP s) tether membranes at plasmodesmata

EMBO reports, 2019-08, Vol.20 (8)

2019

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Histones and histone variant families in prokaryotes

Nature communications, 2024-09, Vol.15 (1), p.7950-13, Article 7950

2024

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Structural diversity of oligomeric β-propellers with different numbers of identical blades

eLife, 2019-10, Vol.8

2019

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Auto-regulation of Rab5 GEF activity in Rabex5 by allosteric structural changes, catalytic core dynamics and ubiquitin binding

eLife, 2019-11, Vol.8

2019

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An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins

PloS one, 2017-08, Vol.12 (8), p.e0182016-e0182016

2017

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PiPred – a deep-learning method for prediction of π-helices in protein sequences

Scientific reports, 2019-05, Vol.9 (1), p.6888-6888, Article 6888

2019

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Evolutionary relationships of microbial aromatic prenyltransferases

PloS one, 2011-11, Vol.6 (11), p.e27336-e27336

2011

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Architecture of the biofilm-associated archaic Chaperone-Usher pilus CupE from Pseudomonas aeruginosa

PLoS pathogens, 2023-04, Vol.19 (4), p.e1011177-e1011177

2023

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The evolution of the huntingtin-associated protein 40 (HAP40) in conjunction with huntingtin

BMC ecology and evolution, 2020-12, Vol.20 (1), p.162, Article 162

2020

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How do I get the most out of my protein sequence using bioinformatics tools?

Acta crystallographica. Section D, Biological crystallography., 2021-09, Vol.77 (9), p.1116-1126

2021

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Bioinformatics of the TULIP domain superfamily

Biochemical Society transactions, 2011-08, Vol.39 (4), p.1033-1038

2011

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Structure and Evolution of N-domains in AAA Metalloproteases

Journal of molecular biology, 2015-02, Vol.427 (4), p.910-923

2015

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Cradle-loop barrels and the concept of metafolds in protein classification by natural descent

Current opinion in structural biology, 2008-06, Vol.18 (3), p.358-365

2008

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A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core

Journal of molecular biology, 2018-07, Vol.430 (15), p.2237-2243

2018

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PII-like signaling proteins: a new paradigm in orchestrating cellular homeostasis

Current opinion in microbiology, 2024-06, Vol.79, p.102453-102453, Article 102453

2024

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From ancestral peptides to designed proteins

Current opinion in structural biology, 2018-02, Vol.48, p.103-109

2018

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pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models

Bioinformatics (Oxford, England), 2023-10, Vol.39 (10)

2023

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DeepCoil-a fast and accurate prediction of coiled-coil domains in protein sequences

The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis

The TULIP superfamily of eukaryotic lipid-binding proteins as a mediator of lipid sensing and transport

Protein Sequence Analysis Using the MPI Bioinformatics Toolkit

A vocabulary of ancient peptides at the origin of folded proteins

A multidomain connector links the outer membrane and cell wall in phylogenetically deep-branching bacteria

Homology of SMP domains to the TULIP superfamily of lipid-binding proteins provides a structural basis for lipid exchange between ER and mitochondria

From cyanobacteria to plants: conservation of PII functions during plastid evolution

Multiple C2 domains and transmembrane region proteins ( MCTP s) tether membranes at plasmodesmata

Histones and histone variant families in prokaryotes

Structural diversity of oligomeric β-propellers with different numbers of identical blades

Auto-regulation of Rab5 GEF activity in Rabex5 by allosteric structural changes, catalytic core dynamics and ubiquitin binding

An evolutionarily conserved glycine-tyrosine motif forms a folding core in outer membrane proteins

PiPred – a deep-learning method for prediction of π-helices in protein sequences

Evolutionary relationships of microbial aromatic prenyltransferases

Architecture of the biofilm-associated archaic Chaperone-Usher pilus CupE from Pseudomonas aeruginosa

The evolution of the huntingtin-associated protein 40 (HAP40) in conjunction with huntingtin

How do I get the most out of my protein sequence using bioinformatics tools?

Bioinformatics of the TULIP domain superfamily

Structure and Evolution of N-domains in AAA Metalloproteases

Cradle-loop barrels and the concept of metafolds in protein classification by natural descent

A Completely Reimplemented MPI Bioinformatics Toolkit with a New HHpred Server at its Core

PII-like signaling proteins: a new paradigm in orchestrating cellular homeostasis

From ancestral peptides to designed proteins

pLM-BLAST: distant homology detection based on direct comparison of sequence representations from protein language models

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