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Platform-Independent Genome-Wide Pattern of DNA Copy-Number Alterations Predicting Astrocytoma Survival and Response to Treatment Revealed by the GSVD Formulated as a Comparative Spectral Decomposition

PloS one, 2016-10, Vol.11 (10), p.e0164546-e0164546

2016

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Tensor GSVD of patient- and platform-matched tumor and normal DNA copy-number profiles uncovers chromosome arm-wide patterns of tumor-exclusive platform-consistent alterations encoding for cell transformation and predicting ovarian cancer survival

PloS one, 2015-04, Vol.10 (4), p.e0121396

2015

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A Tensor Higher-Order Singular Value Decomposition for Integrative Analysis of DNA Microarray Data from Different Studies

Proceedings of the National Academy of Sciences - PNAS, 2007-11, Vol.104 (47), p.18371-18376

2007

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Singular Value Decomposition for Genome-Wide Expression Data Processing and Modeling

Proceedings of the National Academy of Sciences - PNAS, 2000-08, Vol.97 (18), p.10101-10106

2000

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Discovery of Principles of Nature from Mathematical Modeling of DNA Microarray Data

Proceedings of the National Academy of Sciences - PNAS, 2006-10, Vol.103 (44), p.16063-16064

Alter, Orly

2006

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A higher-order generalized singular value decomposition for comparison of global mRNA expression from multiple organisms

PloS one, 2011-12, Vol.6 (12), p.e28072-e28072

2011

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Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms

Proceedings of the National Academy of Sciences - PNAS, 2003-03, Vol.100 (6), p.3351-3356

2003

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GSVD comparison of patient-matched normal and tumor aCGH profiles reveals global copy-number alterations predicting glioblastoma multiforme survival

PloS one, 2012-01, Vol.7 (1), p.e30098-e30098

2012

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SVD identifies transcript length distribution functions from DNA microarray data and reveals evolutionary forces globally affecting GBM metabolism

PloS one, 2013-11, Vol.8 (11), p.e78913-e78913

2013

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Abstract A60: DNA copy-number alterations in primary ovarian serous cystadenocarcinoma encoding for cell transformation and predicting survival and response to platinum therapy throughout the course of the disease

Clinical cancer research, 2016-01, Vol.22 (2_Supplement), p.A60-A60

Alter, Orly

2016

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Singular Value Decomposition of Genome-Scale mRNA Lengths Distribution Reveals Asymmetry in RNA Gel Electrophoresis Band Broadening

Proceedings of the National Academy of Sciences - PNAS, 2006-08, Vol.103 (32), p.11828-11833

2006

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Mathematically universal and biologically consistent astrocytoma genotype encodes for transformation and predicts survival phenotype

APL bioengineering, 2018-09, Vol.2 (3), p.031909-031909-12

2018

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GSVD- and tensor GSVD-uncovered patterns of DNA copy-number alterations predict adenocarcinomas survival in general and in response to platinum

APL bioengineering, 2019-09, Vol.3 (3), p.036104-036104

2019

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Mathematical modelling of DNA replication reveals a trade-off between coherence of origin activation and robustness against rereplication

PLoS computational biology, 2010-05, Vol.6 (5), p.e1000783-e1000783

2010

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Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription

Proceedings of the National Academy of Sciences - PNAS, 2004-11, Vol.101 (47), p.16577-16582

2004

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Reconstructing the Pathways of a Cellular System from Genome-Scale Signals by Using Matrix and Tensor Computations

Proceedings of the National Academy of Sciences - PNAS, 2005-12, Vol.102 (49), p.17559-17564

2005

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Variation in Gene Expression Patterns in Follicular Lymphoma and the Response to Rituximab

Proceedings of the National Academy of Sciences - PNAS, 2003-02, Vol.100 (4), p.1926-1930

2003

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Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA

PloS one, 2011-04, Vol.6 (4), p.e18768

2011

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Retrospective clinical trial experimentally validates glioblastoma genome-wide pattern of DNA copy-number alterations predictor of survival

APL bioengineering, 2020-06, Vol.4 (2), p.026106-026106

2020

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Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression

Molecular systems biology, 2009, Vol.5 (1), p.312-n/a

2009

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Abstract 4262: Mathematically universal and biologically consistent astrocytoma genotype encodes for transformation and predicts survival phenotype

Cancer research (Chicago, Ill.), 2018-07, Vol.78 (13_Supplement), p.4262-4262

2018

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Genomic signal processing: from matrix algebra to genetic networks

Methods in molecular biology (Clifton, N.J.), 2007, Vol.377, p.17

Alter, Orly

2007

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Prospective validation from a retrospective trial that validated an AI/ML-derived whole-genome biomarker as the most accurate and precise predictor of survival and response to treatment in glioblastoma

Journal of clinical oncology, 2024-06, Vol.42 (16_suppl), p.e14028-e14028

2024

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Abstract 4267: Patterns of DNA copy-number alterations revealed by the GSVD and tensor GSVD encode for cell transformation and predict survival and response to platinum in adenocarcinomas

Cancer research (Chicago, Ill.), 2018-07, Vol.78 (13_Supplement), p.4267-4267

2018

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MP06-15 REDEFINING THE BLADDER CANCER PHENOTYPE USING PATTERNS OF FAMILIAL RISK

The Journal of urology, 2018-04, Vol.199 (4), p.e57-e57

2018

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Platform-Independent Genome-Wide Pattern of DNA Copy-Number Alterations Predicting Astrocytoma Survival and Response to Treatment Revealed by the GSVD Formulated as a Comparative Spectral Decomposition

Tensor GSVD of patient- and platform-matched tumor and normal DNA copy-number profiles uncovers chromosome arm-wide patterns of tumor-exclusive platform-consistent alterations encoding for cell transformation and predicting ovarian cancer survival

A Tensor Higher-Order Singular Value Decomposition for Integrative Analysis of DNA Microarray Data from Different Studies

Singular Value Decomposition for Genome-Wide Expression Data Processing and Modeling

Discovery of Principles of Nature from Mathematical Modeling of DNA Microarray Data

A higher-order generalized singular value decomposition for comparison of global mRNA expression from multiple organisms

Generalized singular value decomposition for comparative analysis of genome-scale expression data sets of two different organisms

GSVD comparison of patient-matched normal and tumor aCGH profiles reveals global copy-number alterations predicting glioblastoma multiforme survival

SVD identifies transcript length distribution functions from DNA microarray data and reveals evolutionary forces globally affecting GBM metabolism

Abstract A60: DNA copy-number alterations in primary ovarian serous cystadenocarcinoma encoding for cell transformation and predicting survival and response to platinum therapy throughout the course of the disease

Singular Value Decomposition of Genome-Scale mRNA Lengths Distribution Reveals Asymmetry in RNA Gel Electrophoresis Band Broadening

Mathematically universal and biologically consistent astrocytoma genotype encodes for transformation and predicts survival phenotype

GSVD- and tensor GSVD-uncovered patterns of DNA copy-number alterations predict adenocarcinomas survival in general and in response to platinum

Mathematical modelling of DNA replication reveals a trade-off between coherence of origin activation and robustness against rereplication

Integrative analysis of genome-scale data by using pseudoinverse projection predicts novel correlation between DNA replication and RNA transcription

Reconstructing the Pathways of a Cellular System from Genome-Scale Signals by Using Matrix and Tensor Computations

Variation in Gene Expression Patterns in Follicular Lymphoma and the Response to Rituximab

Tensor decomposition reveals concurrent evolutionary convergences and divergences and correlations with structural motifs in ribosomal RNA

Retrospective clinical trial experimentally validates glioblastoma genome-wide pattern of DNA copy-number alterations predictor of survival

Global effects of DNA replication and DNA replication origin activity on eukaryotic gene expression

Abstract 4262: Mathematically universal and biologically consistent astrocytoma genotype encodes for transformation and predicts survival phenotype

Genomic signal processing: from matrix algebra to genetic networks

Prospective validation from a retrospective trial that validated an AI/ML-derived whole-genome biomarker as the most accurate and precise predictor of survival and response to treatment in glioblastoma

Abstract 4267: Patterns of DNA copy-number alterations revealed by the GSVD and tensor GSVD encode for cell transformation and predict survival and response to platinum in adenocarcinomas

MP06-15 REDEFINING THE BLADDER CANCER PHENOTYPE USING PATTERNS OF FAMILIAL RISK

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