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DeepLoc 2.0: multi-label subcellular localization prediction using protein language models

Nucleic acids research, 2022-07, Vol.50 (W1), p.W228-W234

2022

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DeepLoc: prediction of protein subcellular localization using deep learning

Bioinformatics (Oxford, England), 2017-11, Vol.33 (21), p.3387-3395

2017

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SignalP 5.0 improves signal peptide predictions using deep neural networks

Nature biotechnology, 2019-04, Vol.37 (4), p.420-423

2019

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SignalP 6.0 predicts all five types of signal peptides using protein language models

Nature biotechnology, 2022-07, Vol.40 (7), p.1023-1025

2022

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DeepLoc 2.1: multi-label membrane protein type prediction using protein language models

Nucleic acids research, 2024-07, Vol.52 (W1), p.W215-W220

2024

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Prediction of GPI-anchored proteins with pointer neural networks

Current research in biotechnology, 2021, Vol.3, p.6-13

2021

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GraphPart: homology partitioning for biological sequence analysis

NAR genomics and bioinformatics, 2023-12, Vol.5 (4)

2023

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Detecting sequence signals in targeting peptides using deep learning

Life science alliance, 2019-10, Vol.2 (5), p.e201900429

2019

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An introduction to deep learning on biological sequence data: examples and solutions

Bioinformatics (Oxford, England), 2017-11, Vol.33 (22), p.3685-3690

2017

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Modeling of waning immunity after SARS-CoV-2 vaccination and influencing factors

Nature communications, 2022-03, Vol.13 (1), p.1614-1614, Article 1614

2022

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Previous immunity shapes immune responses to SARS-CoV-2 booster vaccination and Omicron breakthrough infection risk

Nature communications, 2023-09, Vol.14 (1), p.5624-15, Article 5624

2023

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Improved metagenome binning and assembly using deep variational autoencoders

Nature biotechnology, 2021-05, Vol.39 (5), p.555-560

2021

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SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects

NAR genomics and bioinformatics, 2024-09, Vol.6 (3)

2024

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DeepLoc: prediction of protein subcellular localization using deep learning

Bioinformatics (Oxford, England), 2017-12, Vol.33 (24), p.4049-4049

2017

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Spectrum of Protein Location in Proteomes Captures Evolutionary Relationship Between Species

Journal of molecular evolution, 2021-10, Vol.89 (8), p.544-553

2021

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Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii

Scientific reports, 2020-02, Vol.10 (1), p.2728-2728, Article 2728

2020

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Humoral and cellular immune responses after three or four doses of BNT162b2 in patients with hematological malignancies

European journal of haematology, 2023-08, Vol.111 (2), p.229-239

2023

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Distinguishing SARS-CoV-2 infection and vaccine responses up to 18 months post-infection using nucleocapsid protein and receptor-binding domain antibodies

Microbiology spectrum, 2023-10, Vol.11 (5), p.e0179623-e0179623

2023

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Antibody responses and risk factors associated with impaired immunological outcomes following two doses of BNT162b2 COVID-19 vaccination in patients with chronic pulmonary diseases

BMJ open respiratory research, 2022-07, Vol.9 (1), p.e001268

2022

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1111-P: Integrating Longitudinal Clinical and Baseline Multiomics Data for Predicting C-Peptide Progression in Newly Diagnosed Type 1 Diabetes

Diabetes (New York, N.Y.), 2021-06, Vol.70 (Supplement_1)

2021

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Deep protein representations enable recombinant protein expression prediction

Computational biology and chemistry, 2021-12, Vol.95, p.107596-107596, Article 107596

2021

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Waning humoral and cellular immunity after COVID-19 vaccination in patients with psoriasis treated with methotrexate and biologics: a cohort study

British journal of dermatology (1951), 2023-04, Vol.188 (5), p.661-669

2023

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DeepLoc 2.0: multi-label subcellular localization prediction using protein language models

DeepLoc: prediction of protein subcellular localization using deep learning

SignalP 5.0 improves signal peptide predictions using deep neural networks

SignalP 6.0 predicts all five types of signal peptides using protein language models

DeepLoc 2.1: multi-label membrane protein type prediction using protein language models

Prediction of GPI-anchored proteins with pointer neural networks

GraphPart: homology partitioning for biological sequence analysis

Detecting sequence signals in targeting peptides using deep learning

An introduction to deep learning on biological sequence data: examples and solutions

Modeling of waning immunity after SARS-CoV-2 vaccination and influencing factors

Previous immunity shapes immune responses to SARS-CoV-2 booster vaccination and Omicron breakthrough infection risk

Improved metagenome binning and assembly using deep variational autoencoders

SpanSeq: similarity-based sequence data splitting method for improved development and assessment of deep learning projects

DeepLoc: prediction of protein subcellular localization using deep learning

Spectrum of Protein Location in Proteomes Captures Evolutionary Relationship Between Species

Decline in Antibody Concentration 6 Months After Two Doses of SARS-CoV-2 BNT162b2 Vaccine in Solid Organ Transplant Recipients and Healthy Controls

Similar genomic patterns of clinical infective endocarditis and oral isolates of Streptococcus sanguinis and Streptococcus gordonii

Multi‐omics analysis reveals drivers of loss of β‐cell function after newly diagnosed autoimmune type 1 diabetes: An INNODIA multicenter study

Humoral and cellular immune responses after three or four doses of BNT162b2 in patients with hematological malignancies

Humoral and T-cell response 12 months after the first BNT162b2 vaccination in solid organ transplant recipients and controls: Kinetics, associated factors, and role of SARS-CoV-2 infection

Distinguishing SARS-CoV-2 infection and vaccine responses up to 18 months post-infection using nucleocapsid protein and receptor-binding domain antibodies

Antibody responses and risk factors associated with impaired immunological outcomes following two doses of BNT162b2 COVID-19 vaccination in patients with chronic pulmonary diseases

1111-P: Integrating Longitudinal Clinical and Baseline Multiomics Data for Predicting C-Peptide Progression in Newly Diagnosed Type 1 Diabetes

Deep protein representations enable recombinant protein expression prediction

Waning humoral and cellular immunity after COVID-19 vaccination in patients with psoriasis treated with methotrexate and biologics: a cohort study

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