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Guaranteed Discrete Energy Optimization on Large Protein Design Problems

Journal of chemical theory and computation, 2015-12, Vol.11 (12), p.5980-5989

2015

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Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis

PloS one, 2011-12, Vol.6 (12), p.e29165-e29165

2011

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A new framework for computational protein design through cost function network optimization

Bioinformatics, 2013-09, Vol.29 (17), p.2129-2136

2013

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Multi-language evaluation of exact solvers in graphical model discrete optimization

Constraints : an international journal, 2016-07, Vol.21 (3), p.413-434

2016

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Computational protein design as an optimization problem

Artificial intelligence, 2014-07, Vol.212, p.59-79

2014

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Fast search algorithms for computational protein design

Journal of computational chemistry, 2016-05, Vol.37 (12), p.1048-1058

2016

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Variable neighborhood search for graphical model energy minimization

Artificial intelligence, 2020-01, Vol.278, p.103194, Article 103194

2020

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Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems

Journal of chemical information and modeling, 2019-01, Vol.59 (1), p.127-136

2019

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Anytime Hybrid Best-First Search with Tree Decomposition for Weighted CSP

Principles and Practice of Constraint Programming, p.12-29

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Deterministic Search Methods for Computational Protein Design

Methods in molecular biology (Clifton, N.J.), 2017, Vol.1529, p.107

2017

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Bi-objective Discrete Graphical Model Optimization

Integration of Constraint Programming, Artificial Intelligence, and Operations Research, 2024, p.136-152

2024

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Tractability-preserving transformations of global cost functions

Artificial intelligence, 2016-09, Vol.238, p.166-189

2016

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Virtual Pairwise Consistency in Cost Function Networks

Integration of Constraint Programming, Artificial Intelligence, and Operations Research, 2023, Vol.13884, p.417-426

2023

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Synthesis of a New Cationic Pyropheophorbide Derivative and Studies of its Aggregation Process in Aqueous Solution

Photochemistry and photobiology, 1997-09, Vol.66 (3), p.336-345

1997

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Towards Parallel Non Serial Dynamic Programming for Solving Hard Weighted CSP

Lecture Notes in Computer Science, 2010, Vol.6308, p.53-60

2010

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Ca/Mg Exchange in Parvalbumin and other EF-hand Proteins. A Theoretical Study

Journal of molecular biology, 1999-01, Vol.285 (2), p.857-873

1999

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BioMAJ: a flexible framework for databanks synchronization and processing

Bioinformatics, 2008-08, Vol.24 (16), p.1823-1825

2008

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Simple Two-Body Cation−Water Interaction Potentials Derived from ab Initio Calculations. Comparison to Results Obtained with an Empirical Approach

The journal of physical chemistry. B, 1997-06, Vol.101 (25), p.5018-5025

1997

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Filtering Decomposable Global Cost Functions

Proceedings of the ... AAAI Conference on Artificial Intelligence, 2021-09, Vol.26 (1), p.407-413

2021

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Computational Protein Design as a Cost Function Network Optimization Problem

Lecture Notes in Computer Science, 2012, p.840-849

2012

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New Effective Potentials Extraction Method for the Interaction between Cations and Water

The journal of physical chemistry. B, 1998-10, Vol.102 (43), p.8579-8587

1998

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Ca 2+ /Mg 2+ exchange in parvalbumin and other EF-hand proteins. A theoretical study

Journal of molecular biology, 1999, Vol.285 (2), p.857-873

1999

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Ca 2+ /Mg 2+ exchange in parvalbumin and other EF-hand proteins. A theoretical study 1 1Edited by R. Huber

Journal of molecular biology, 1999-01, Vol.285 (2), p.857-873

1999

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Cost Function Networks to Solve Large Computational Protein Design Problems

Operations Research and Simulation in Healthcare, 2021, p.81-102

2021

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Atomistic Mechanisms for the Nucleation of Aluminum Oxide Nanoparticles

The journal of physical chemistry. A, Molecules, spectroscopy, kinetics, environment, & general theory, 2015-08, Vol.119 (33), p.8944-8949

2015

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Guaranteed Discrete Energy Optimization on Large Protein Design Problems

Gene regulatory network reconstruction using Bayesian networks, the Dantzig Selector, the Lasso and their meta-analysis

A new framework for computational protein design through cost function network optimization

Multi-language evaluation of exact solvers in graphical model discrete optimization

Computational protein design as an optimization problem

Fast search algorithms for computational protein design

Variable neighborhood search for graphical model energy minimization

Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems

Anytime Hybrid Best-First Search with Tree Decomposition for Weighted CSP

Deterministic Search Methods for Computational Protein Design

Bi-objective Discrete Graphical Model Optimization

Tractability-preserving transformations of global cost functions

Virtual Pairwise Consistency in Cost Function Networks

Synthesis of a New Cationic Pyropheophorbide Derivative and Studies of its Aggregation Process in Aqueous Solution

Towards Parallel Non Serial Dynamic Programming for Solving Hard Weighted CSP

Ca/Mg Exchange in Parvalbumin and other EF-hand Proteins. A Theoretical Study

BioMAJ: a flexible framework for databanks synchronization and processing

Simple Two-Body Cation−Water Interaction Potentials Derived from ab Initio Calculations. Comparison to Results Obtained with an Empirical Approach

Filtering Decomposable Global Cost Functions

Computational Protein Design as a Cost Function Network Optimization Problem

New Effective Potentials Extraction Method for the Interaction between Cations and Water

Ca 2+ /Mg 2+ exchange in parvalbumin and other EF-hand proteins. A theoretical study

Ca 2+ /Mg 2+ exchange in parvalbumin and other EF-hand proteins. A theoretical study 1 1Edited by R. Huber

Cost Function Networks to Solve Large Computational Protein Design Problems

Atomistic Mechanisms for the Nucleation of Aluminum Oxide Nanoparticles

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