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Advancing functional and translational microbiome research using meta-omics approaches

Microbiome, 2019-12, Vol.7 (1), p.154-12, Article 154

2019

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Low temperature MBBR nitrification: Microbiome analysis

Water research (Oxford), 2017-03, Vol.111, p.224-233

2017

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Resistant starch, microbiome, and precision modulation

Gut microbes, 2021-01, Vol.13 (1), p.1926842-1926842

2021

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Functional impacts of the intestinal microbiome in the pathogenesis of inflammatory bowel disease

Inflammatory bowel diseases, 2015-01, Vol.21 (1), p.139-153

2015

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Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease

Nature communications, 2018-07, Vol.9 (1), p.2873-14, Article 2873

2018

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Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn’s disease

Nature communications, 2020-08, Vol.11 (1), p.4120-4120, Article 4120

2020

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Defining the vulnerable period for re-establishment of Clostridium difficile colonization after treatment of C. difficile infection with oral vancomycin or metronidazole

PloS one, 2013-10, Vol.8 (10), p.e76269-e76269

2013

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Gene Expression Profile of Campylobacter jejuni in Response to Growth Temperature Variation

Journal of Bacteriology, 2003-03, Vol.185 (6), p.2009-2016

Stintzi, Alain

2003

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Altered intestinal microbiota–host mitochondria crosstalk in new onset Crohn’s disease

Nature communications, 2016-11, Vol.7 (1), p.13419-13419, Article 13419

2016

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The transcriptional landscape of Campylobacter jejuni under iron replete and iron limited growth conditions

PloS one, 2013-11, Vol.8 (11), p.e79475-e79475

2013

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An in vitro model maintaining taxon-specific functional activities of the gut microbiome

Nature communications, 2019-09, Vol.10 (1), p.4146-11, Article 4146

2019

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Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota

Science (American Association for the Advancement of Science), 2012-10, Vol.338 (6103), p.120-123

2012

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RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs

Microbiome, 2020-03, Vol.8 (1), p.33-33, Article 33

2020

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Blenderized Enteral Nutrition Diet Study: Feasibility, Clinical, and Microbiome Outcomes of Providing Blenderized Feeds Through a Gastric Tube in a Medically Complex Pediatric Population

JPEN. Journal of parenteral and enteral nutrition, 2018-08, Vol.42 (6), p.1046-1060

2018

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MetaLab: an automated pipeline for metaproteomic data analysis

Microbiome, 2017-12, Vol.5 (1), p.157-157, Article 157

2017

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L-Fucose utilization provides Campylobacter jejuni with a competitive advantage

Proceedings of the National Academy of Sciences - PNAS, 2011-04, Vol.108 (17), p.7194-7199

2011

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The mucosal–luminal interface: an ideal sample to study the mucosa-associated microbiota and the intestinal microbial biogeography

Pediatric research, 2019-05, Vol.85 (6), p.895-903

2019

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Meso and micro-scale response of post carbon removal nitrifying MBBR biofilm across carrier type and loading

Water research (Oxford), 2016-03, Vol.91, p.235-243

2016

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Virome Sequencing of the Human Intestinal Mucosal-Luminal Interface

Frontiers in cellular and infection microbiology, 2020-10, Vol.10, p.582187-582187

2020

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Structure and regulon of Campylobacter jejuni ferric uptake regulator Fur define apo-Fur regulation

Proceedings of the National Academy of Sciences - PNAS, 2012-06, Vol.109 (25), p.10047-10052

2012

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Insights into the Mode of Action of Benzyl Isothiocyanate on Campylobacter jejuni

Applied and Environmental Microbiology, 2013-11, Vol.79 (22), p.6958-6968

2013

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Disruption of maternal gut microbiota during gestation alters offspring microbiota and immunity

Microbiome, 2018-07, Vol.6 (1), p.124-124, Article 124

2018

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Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics

Nature communications, 2023-06, Vol.14 (1), p.3428-14, Article 3428

2023

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Characterization of the oxidative stress stimulon and PerR regulon of Campylobacter jejuni

BMC genomics, 2009-10, Vol.10 (1), p.481-481, Article 481

2009

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Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics

Gut microbes, 2022-12, Vol.14 (1), p.2035658-2035658

2022

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Advancing functional and translational microbiome research using meta-omics approaches

Low temperature MBBR nitrification: Microbiome analysis

Resistant starch, microbiome, and precision modulation

Functional impacts of the intestinal microbiome in the pathogenesis of inflammatory bowel disease

Metaproteomics reveals associations between microbiome and intestinal extracellular vesicle proteins in pediatric inflammatory bowel disease

Widespread protein lysine acetylation in gut microbiome and its alterations in patients with Crohn’s disease

Defining the vulnerable period for re-establishment of Clostridium difficile colonization after treatment of C. difficile infection with oral vancomycin or metronidazole

Gene Expression Profile of Campylobacter jejuni in Response to Growth Temperature Variation

Altered intestinal microbiota–host mitochondria crosstalk in new onset Crohn’s disease

The transcriptional landscape of Campylobacter jejuni under iron replete and iron limited growth conditions

An in vitro model maintaining taxon-specific functional activities of the gut microbiome

Intestinal Inflammation Targets Cancer-Inducing Activity of the Microbiota

RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugs

Blenderized Enteral Nutrition Diet Study: Feasibility, Clinical, and Microbiome Outcomes of Providing Blenderized Feeds Through a Gastric Tube in a Medically Complex Pediatric Population

MetaLab: an automated pipeline for metaproteomic data analysis

L-Fucose utilization provides Campylobacter jejuni with a competitive advantage

The mucosal–luminal interface: an ideal sample to study the mucosa-associated microbiota and the intestinal microbial biogeography

Meso and micro-scale response of post carbon removal nitrifying MBBR biofilm across carrier type and loading

Virome Sequencing of the Human Intestinal Mucosal-Luminal Interface

Structure and regulon of Campylobacter jejuni ferric uptake regulator Fur define apo-Fur regulation

Insights into the Mode of Action of Benzyl Isothiocyanate on Campylobacter jejuni

Disruption of maternal gut microbiota during gestation alters offspring microbiota and immunity

Revealing proteome-level functional redundancy in the human gut microbiome using ultra-deep metaproteomics

Characterization of the oxidative stress stimulon and PerR regulon of Campylobacter jejuni

Evaluating live microbiota biobanking using an ex vivo microbiome assay and metaproteomics

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