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Conformational dynamics and thermodynamics of protein-ligand binding studied by NMR relaxation

Biochemical Society transactions, 2012-04, Vol.40 (2), p.419-423

Akke, Mikael

2012

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1H R1ρ relaxation dispersion experiments in aromatic side chains

Journal of biomolecular NMR, 2021-12, Vol.75 (10-12), p.383-392

2021

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Structural characterization of the microbial enzyme urocanate reductase mediating imidazole propionate production

Nature communications, 2021-03, Vol.12 (1), p.1347-1347, Article 1347

2021

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Interplay between Conformational Entropy and Solvation Entropy in Protein–Ligand Binding

Journal of the American Chemical Society, 2019-02, Vol.141 (5), p.2012-2026

2019

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Ring Flips Revisited: 13C Relaxation Dispersion Measurements of Aromatic Side Chain Dynamics and Activation Barriers in Basic Pancreatic Trypsin Inhibitor

Biochemistry (Easton), 2014-07, Vol.53 (28), p.4519-4525

2014

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Conformational Dynamics of Phytoglobin BvPgb1.2 from Beta vulgaris ssp. vulgaris

International journal of molecular sciences, 2023-02, Vol.24 (4), p.3973

2023

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Stability and Local Unfolding of SOD1 in the Presence of Protein Crowders

The journal of physical chemistry. B, 2019-03, Vol.123 (9), p.1920-1930

2019

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Ultrastructural evidence for self-replication of Alzheimer-associated Aβ42 amyloid along the sides of fibrils

Proceedings of the National Academy of Sciences - PNAS, 2020-05, Vol.117 (21), p.11265-11273

2020

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Entropy–Entropy Compensation between the Protein, Ligand, and Solvent Degrees of Freedom Fine-Tunes Affinity in Ligand Binding to Galectin-3C

JACS Au, 2021-04, Vol.1 (4), p.484-500

2021

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Computational design of a leucine-rich repeat protein with a predefined geometry

Proceedings of the National Academy of Sciences - PNAS, 2014-12, Vol.111 (50), p.17875-17880

2014

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Protein Flexibility and Conformational Entropy in Ligand Design Targeting the Carbohydrate Recognition Domain of Galectin-3

Journal of the American Chemical Society, 2010-10, Vol.132 (41), p.14577-14589

2010

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The Carbohydrate-Binding Site in Galectin-3 Is Preorganized To Recognize a Sugarlike Framework of Oxygens: Ultra-High-Resolution Structures and Water Dynamics

Biochemistry (Easton), 2012-01, Vol.51 (1), p.296-306

2012

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Conformational exchange of aromatic side chains characterized by L-optimized TROSY-selected 13C CPMG relaxation dispersion

Journal of biomolecular NMR, 2012-09, Vol.54 (1), p.9-14

2012

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Enzyme Dynamics during Catalysis

Science (American Association for the Advancement of Science), 2002-02, Vol.295 (5559), p.1520-1523

2002

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Slow Aromatic Ring Flips Detected Despite Near-Degenerate NMR Frequencies of the Exchanging Nuclei

The journal of physical chemistry. B, 2013-08, Vol.117 (31), p.9241-9247

2013

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NMR Studies of Aromatic Ring Flips to Probe Conformational Fluctuations in Proteins

The journal of physical chemistry. B, 2023-01, Vol.127 (3), p.591-599

2023

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Differential Responses of the Backbone and Side-Chain Conformational Dynamics in FKBP12 upon Binding the Transition-State Analog FK506: Implications for Transition-State Stabilization and Target Protein Recognition

Journal of molecular biology, 2009-03, Vol.387 (1), p.233-244

2009

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Conformational entropy changes upon lactose binding to the carbohydrate recognition domain of galectin-3

Journal of biomolecular NMR, 2009-09, Vol.45 (1-2), p.157-169

2009

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Transient structural distortion of metal-free Cu/Zn superoxide dismutase triggers aberrant oligomerization

Proceedings of the National Academy of Sciences - PNAS, 2009-10, Vol.106 (43), p.18273-18278

2009

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Off-resonance rotating-frame relaxation dispersion experiment for 13C in aromatic side chains using L-optimized TROSY-selection

Journal of biomolecular NMR, 2014-05, Vol.59 (1), p.23-29

2014

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Flexibility and Function of Distal Substrate-Binding Tryptophans in the Blue Mussel β-Mannanase MeMan5A and Their Role in Hydrolysis and Transglycosylation

Catalysts, 2023-09, Vol.13 (9), p.1281

2023

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13C relaxation experiments for aromatic side chains employing longitudinal- and transverse-relaxation optimized NMR spectroscopy

Journal of biomolecular NMR, 2012-07, Vol.53 (3), p.181-190

2012

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Transition-State Compressibility and Activation Volume of Transient Protein Conformational Fluctuations

JACS Au, 2021-06, Vol.1 (6), p.833-842

2021

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Local Cooperativity in an Amyloidogenic State of Human Lysozyme Observed at Atomic Resolution

Journal of the American Chemical Society, 2010-11, Vol.132 (44), p.15580-15588

2010

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The Ribosomal Stalk Binds to Translation Factors IF2, EF-Tu, EF-G and RF3 via a Conserved Region of the L12 C-terminal Domain

Journal of molecular biology, 2007-01, Vol.365 (2), p.468-479

2007

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Conformational dynamics and thermodynamics of protein-ligand binding studied by NMR relaxation

1H R1ρ relaxation dispersion experiments in aromatic side chains

Structural characterization of the microbial enzyme urocanate reductase mediating imidazole propionate production

Interplay between Conformational Entropy and Solvation Entropy in Protein–Ligand Binding

Ring Flips Revisited: 13C Relaxation Dispersion Measurements of Aromatic Side Chain Dynamics and Activation Barriers in Basic Pancreatic Trypsin Inhibitor

Conformational Dynamics of Phytoglobin BvPgb1.2 from Beta vulgaris ssp. vulgaris

Stability and Local Unfolding of SOD1 in the Presence of Protein Crowders

Ultrastructural evidence for self-replication of Alzheimer-associated Aβ42 amyloid along the sides of fibrils

Entropy–Entropy Compensation between the Protein, Ligand, and Solvent Degrees of Freedom Fine-Tunes Affinity in Ligand Binding to Galectin-3C

Computational design of a leucine-rich repeat protein with a predefined geometry

Protein Flexibility and Conformational Entropy in Ligand Design Targeting the Carbohydrate Recognition Domain of Galectin-3

The Carbohydrate-Binding Site in Galectin-3 Is Preorganized To Recognize a Sugarlike Framework of Oxygens: Ultra-High-Resolution Structures and Water Dynamics

Conformational exchange of aromatic side chains characterized by L-optimized TROSY-selected 13C CPMG relaxation dispersion

Enzyme Dynamics during Catalysis

Slow Aromatic Ring Flips Detected Despite Near-Degenerate NMR Frequencies of the Exchanging Nuclei

NMR Studies of Aromatic Ring Flips to Probe Conformational Fluctuations in Proteins

Differential Responses of the Backbone and Side-Chain Conformational Dynamics in FKBP12 upon Binding the Transition-State Analog FK506: Implications for Transition-State Stabilization and Target Protein Recognition

Conformational entropy changes upon lactose binding to the carbohydrate recognition domain of galectin-3

Transient structural distortion of metal-free Cu/Zn superoxide dismutase triggers aberrant oligomerization

Off-resonance rotating-frame relaxation dispersion experiment for 13C in aromatic side chains using L-optimized TROSY-selection

Flexibility and Function of Distal Substrate-Binding Tryptophans in the Blue Mussel β-Mannanase MeMan5A and Their Role in Hydrolysis and Transglycosylation

13C relaxation experiments for aromatic side chains employing longitudinal- and transverse-relaxation optimized NMR spectroscopy

Transition-State Compressibility and Activation Volume of Transient Protein Conformational Fluctuations

Local Cooperativity in an Amyloidogenic State of Human Lysozyme Observed at Atomic Resolution

The Ribosomal Stalk Binds to Translation Factors IF2, EF-Tu, EF-G and RF3 via a Conserved Region of the L12 C-terminal Domain

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