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A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding

Cell reports (Cambridge), 2021-03, Vol.34 (11), p.108856-108856, Article 108856

2021

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Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies

mAbs, 2022, Vol.14 (1), p.2008790-2008790

2022

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Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires

Molecular systems design & engineering, 2019-08, Vol.4 (4), p.71-736

2019

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Experimental validation of immunogenic SARS-CoV-2 T cell epitopes identified by artificial intelligence

Frontiers in immunology, 2023, Vol.14, p.1265044-1265044

2023

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In silico proof of principle of machine learning-based antibody design at unconstrained scale

mAbs, 2022, Vol.14 (1), p.2031482-2031482

2022

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Corrigendum: Experimental validation of immunogenic SARS-CoV-2 T cell epitopes identified by artificial intelligence

Frontiers in immunology, 2024, Vol.15, p.1377041-1377041

2024

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ALLO: A tool to discriminate and prioritize allosteric pockets

Chemical biology & drug design, 2018-04, Vol.91 (4), p.845-853

2018

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Stability, orientation and position preference of the stem region (residues 689-703) in Hepatitis C Virus (HCV) envelope glycoprotein E2: a molecular dynamics study [version 2; peer review: 2 approved, 1 approved with reservations]

F1000 research, 2013, Vol.2, p.64-64

2013

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Progress and challenges for the application of machine learning for neglected tropical diseases [version 1; peer review: 1 approved]

F1000 research, 2023, Vol.12, p.287

2023

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immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

Bioinformatics, 2020-06, Vol.36 (11), p.3594-3596

2020

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Machine learning and molecular simulation ascertain antimicrobial peptide against Klebsiella pneumoniae from public database

Computational biology and chemistry, 2023-02, Vol.102, p.107800, Article 107800

2023

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Interorganelle Tethering to Endocytic Organelles Determines Directional Cytokine Transport in CD4 + T Cells

The Journal of immunology (1950), 2020-12, Vol.205 (11), p.2988-3000

2020

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ENRI: A tool for selecting structure‐based virtual screening target conformations

Chemical biology & drug design, 2017-05, Vol.89 (5), p.762-771

2017

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Changes in Chemical Composition and Rice Cooking Quality Through the Utilization of Respiration Heat of Freshly Harvested Rice During Storage

Journal of wetlands environmental management, 2017-07, Vol.5 (2), p.43-52

2017

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Characterizing pockets on the surface of proteins by computational tools

Akbar, Rahmad

2018

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Development of Automatic Weather Station Monitoring System for Broiler Chicken Coop

2021 IEEE Bombay Section Signature Conference (IBSSC), 2021, p.1-6

2021

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Collagen-Derived Cryptides: Machine-Learning Prediction and Molecular Dynamic Interaction Against Klebsiella pneumoniae Biofilm Synthesis Precursor

Malaysian applied biology, 2022-12, Vol.51 (5), p.59-75

2022

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Toward real-world automated antibody design with combinatorial Bayesian optimization

Cell reports methods, 2023-01, Vol.3 (1), p.100374-100374, Article 100374

2023

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Reference-based comparison of adaptive immune receptor repertoires

Cell reports methods, 2022-08, Vol.2 (8), p.100269-100269, Article 100269

2022

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Stability, orientation and position preference of the stem region (residues 689-703) in Hepatitis C Virus (HCV) envelope glycoprotein E2: a molecular dynamics study [version 1; peer review: 3 approved with reservations]

F1000 research, 2013, Vol.2

2013

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Interaction of ganoderic acid on HIV related target: molecular docking studies

Bioinformation, 2011-01, Vol.7 (8), p.413-417

2011

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Comparison of Data Partitioning Schema of Parallel Pairwise Alignment on Shared Memory System

Telkomnika, 2015-06, Vol.13 (2), p.694

2015

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Current Challenges and Advancements on the Management of Water Retreatment in Different Production Operations of Shale Reservoirs

Water (Basel), 2021-08, Vol.13 (15), p.2131

2021

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A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding

Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies

Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires

Experimental validation of immunogenic SARS-CoV-2 T cell epitopes identified by artificial intelligence

In silico proof of principle of machine learning-based antibody design at unconstrained scale

Corrigendum: Experimental validation of immunogenic SARS-CoV-2 T cell epitopes identified by artificial intelligence

ALLO: A tool to discriminate and prioritize allosteric pockets

Stability, orientation and position preference of the stem region (residues 689-703) in Hepatitis C Virus (HCV) envelope glycoprotein E2: a molecular dynamics study [version 2; peer review: 2 approved, 1 approved with reservations]

Progress and challenges for the application of machine learning for neglected tropical diseases [version 1; peer review: 1 approved]

immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

Machine learning and molecular simulation ascertain antimicrobial peptide against Klebsiella pneumoniae from public database

Interorganelle Tethering to Endocytic Organelles Determines Directional Cytokine Transport in CD4 + T Cells

ENRI: A tool for selecting structure‐based virtual screening target conformations

Changes in Chemical Composition and Rice Cooking Quality Through the Utilization of Respiration Heat of Freshly Harvested Rice During Storage

Characterizing pockets on the surface of proteins by computational tools

Development of Automatic Weather Station Monitoring System for Broiler Chicken Coop

Collagen-Derived Cryptides: Machine-Learning Prediction and Molecular Dynamic Interaction Against Klebsiella pneumoniae Biofilm Synthesis Precursor

Toward real-world automated antibody design with combinatorial Bayesian optimization

Unconstrained generation of synthetic antibody-antigen structures to guide machine learning methodology for antibody specificity prediction

Reference-based comparison of adaptive immune receptor repertoires

Stability, orientation and position preference of the stem region (residues 689-703) in Hepatitis C Virus (HCV) envelope glycoprotein E2: a molecular dynamics study [version 1; peer review: 3 approved with reservations]

Interaction of ganoderic acid on HIV related target: molecular docking studies

Comparison of Data Partitioning Schema of Parallel Pairwise Alignment on Shared Memory System

In silico proof of principle of machine learning-based antibody design at unconstrained scale

Current Challenges and Advancements on the Management of Water Retreatment in Different Production Operations of Shale Reservoirs

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