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The expanding scope of DNA sequencing

Nature biotechnology, 2012-11, Vol.30 (11), p.1084-1094

2012

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H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions

Nature communications, 2021-01, Vol.12 (1), p.719-719, Article 719

2021

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Chromatin Is Frequently Unknotted at the Megabase Scale

Biophysical journal, 2020-05, Vol.118 (9), p.2268-2279

2020

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The genome sequence of segmental allotetraploid peanut Arachis hypogaea

Nature genetics, 2019-05, Vol.51 (5), p.877-884

2019

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The fundamental role of chromatin loop extrusion in physiological V(D)J recombination

Nature (London), 2019-09, Vol.573 (7775), p.600-604

2019

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CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions

Nature communications, 2021-02, Vol.12 (1), p.1011-1011, Article 1011

2021

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De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture

Proceedings of the National Academy of Sciences - PNAS, 2017-11, Vol.114 (46), p.12126-12131

2017

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Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator

eLife, 2021-04, Vol.10

2021

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MCPH1 inhibits Condensin II during interphase by regulating its SMC2-Kleisin interface

eLife, 2021-12, Vol.10

2021

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A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

Cell, 2014-12, Vol.159 (7), p.1665-1680

2014

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Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals

Genome research, 2020-03, Vol.30 (3), p.447-458

2020

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De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

Science (American Association for the Advancement of Science), 2017-04, Vol.356 (6333), p.92-95

2017

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Using deep learning and Google Street View to estimate the demographic makeup of neighborhoods across the United States

Proceedings of the National Academy of Sciences - PNAS, 2017-12, Vol.114 (50), p.13108-13113

2017

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Cohesin depleted cells rebuild functional nuclear compartments after endomitosis

Nature communications, 2020-12, Vol.11 (1), p.6146-6146, Article 6146

2020

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Exploring chromosomal structural heterogeneity across multiple cell lines

eLife, 2020-10, Vol.9

2020

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Somatic Rearrangement in B Cells: It’s (Mostly) Nuclear Physics

Cell, 2015-08, Vol.162 (4), p.708-711

2015

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Chromosomal‐level genome assembly of the scimitar‐horned oryx: Insights into diversity and demography of a species extinct in the wild

Molecular ecology resources, 2020-11, Vol.20 (6), p.1668-1681

2020

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Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map

Proceedings of the National Academy of Sciences - PNAS, 2017-08, Vol.114 (33), p.8764-8769

2017

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Robust CTCF-Based Chromatin Architecture Underpins Epigenetic Changes in the Heart Failure Stress–Gene Response

Circulation (New York, N.Y.), 2019-04, Vol.139 (16), p.1937-1956

2019

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The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution

PLoS genetics, 2021-08, Vol.17 (8), p.e1009745-e1009745

2021

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GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data

BMC molecular and cell biology, 2020-08, Vol.21 (1), p.60-60, Article 60

2020

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Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater

Gigascience, 2022-03, Vol.11

2022

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Quantitative Analysis of Culture Using Millions of Digitized Books

Science (American Association for the Advancement of Science), 2011-01, Vol.331 (6014), p.176-182

2011

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Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly

International journal of molecular sciences, 2021-04, Vol.22 (9), p.4326

2021

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The expanding scope of DNA sequencing

H3K27me3-rich genomic regions can function as silencers to repress gene expression via chromatin interactions

Chromatin Is Frequently Unknotted at the Megabase Scale

The genome sequence of segmental allotetraploid peanut Arachis hypogaea

The fundamental role of chromatin loop extrusion in physiological V(D)J recombination

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions

De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture

Simple biochemical features underlie transcriptional activation domain diversity and dynamic, fuzzy binding to Mediator

MCPH1 inhibits Condensin II during interphase by regulating its SMC2-Kleisin interface

A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping

Analysis of Hi-C data using SIP effectively identifies loops in organisms from C. elegans to mammals

De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

ESCO1 and CTCF enable formation of long chromatin loops by protecting cohesinSTAG1 from WAPL

Using deep learning and Google Street View to estimate the demographic makeup of neighborhoods across the United States

Cohesin depleted cells rebuild functional nuclear compartments after endomitosis

Exploring chromosomal structural heterogeneity across multiple cell lines

Somatic Rearrangement in B Cells: It’s (Mostly) Nuclear Physics

Chromosomal‐level genome assembly of the scimitar‐horned oryx: Insights into diversity and demography of a species extinct in the wild

Polycomb-mediated chromatin loops revealed by a subkilobase-resolution chromatin interaction map

Robust CTCF-Based Chromatin Architecture Underpins Epigenetic Changes in the Heart Failure Stress–Gene Response

The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolution

GSDB: a database of 3D chromosome and genome structures reconstructed from Hi-C data

Chromosome-length genome assembly and linkage map of a critically endangered Australian bird: the helmeted honeyeater

Quantitative Analysis of Culture Using Millions of Digitized Books

Delineating the Tnt1 Insertion Landscape of the Model Legume Medicago truncatula cv. R108 at the Hi-C Resolution Using a Chromosome-Length Genome Assembly

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