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GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks

Bioinformatics (Oxford, England), 2019-06, Vol.35 (12), p.2159-2161

2019

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A scalable SCENIC workflow for single-cell gene regulatory network analysis

Nature protocols, 2020-07, Vol.15 (7), p.2247-2276

2020

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cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data

Nature methods, 2019-05, Vol.16 (5), p.397-400

2019

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Phenotype molding of stromal cells in the lung tumor microenvironment

Nature medicine, 2018-08, Vol.24 (8), p.1277-1289

2018

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A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain

Cell, 2018-08, Vol.174 (4), p.982-998.e20

2018

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Toward Minimal Residual Disease-Directed Therapy in Melanoma

Cell, 2018-08, Vol.174 (4), p.843-855.e19

2018

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Mapping gene regulatory networks from single-cell omics data

Briefings in functional genomics, 2018-07, Vol.17 (4), p.246-254

2018

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Identification of genomic enhancers through spatial integration of single‐cell transcriptomics and epigenomics

Molecular systems biology, 2020-05, Vol.16 (5), p.e9438-n/a

2020

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Comparative oncogenomics identifies tyrosine kinase FES as a tumor suppressor in melanoma

The Journal of clinical investigation, 2017-06, Vol.127 (6), p.2310-2325

2017

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Identification of expression patterns in the progression of disease stages by integration of transcriptomic data

BMC bioinformatics, 2016-11, Vol.17 (Suppl 15), p.432-432, Article 432

2016

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SCENIC: single-cell regulatory network inference and clustering

Nature methods, 2017-11, Vol.14 (11), p.1083-1086

2017

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Functional Gene Networks: R/Bioc package to generate and analyse gene networks derived from functional enrichment and clustering

Bioinformatics, 2015-05, Vol.31 (10), p.1686-1688

2015

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Decoding gene regulation in the fly brain

Nature (London), 2022-01, Vol.601 (7894), p.630-636

2022

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The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes

Nature genetics, 2018-07, Vol.50 (7), p.1011-1020

2018

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Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

Nature communications, 2016-09, Vol.7 (1), p.12846-11, Article 12846

2016

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Identification of Novel Direct Targets of Drosophila Sine Oculis by Integration of Genome-wide Data Sets

Developmental biology, 2016-05, Vol.415 (1), p.157-167

2016

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Identification of novel direct targets of Drosophila Sine oculis and Eyes absent by integration of genome-wide data sets

Developmental biology, 2016-07, Vol.415 (1), p.157-167

2016

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The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes

Nature genetics, 2018-06, Vol.50 (7), p.1011-1020

2018

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Analyse multiple disease subtypes and build associated gene networks using genome-wide expression profiles

BMC genomics, 2015-05, Vol.16 Suppl 5 (S5), p.S3-S3, Article S3

2015

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Combined analysis of genome-wide expression and copy number profiles to identify key altered genomic regions in cancer

BMC genomics, 2012-10, Vol.13 Suppl 5 (S5), p.S5-S5, Article S5

2012

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Identification of expression patterns in the progression of disease stages by integration of transcriptomic data

BMC bioinformatics, 2016-11, Vol.17 (Suppl 15), p.11-21

2016

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Epigenetic Silencing of BCL2, ETS1, IL27RA and DICER1 in Low-Risk MDS Patients

Blood, 2012-11, Vol.120 (21), p.1704-1704

2012

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Gene Expression Analysis and Profiling of Microarrays Data and RNA-Sequencing Data

Comprehensive Analytical Chemistry, 2014, Vol.63, p.355-384

2014

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Understanding the COVID-19 Pandemic in Nursing Homes (Aragón, Spain): Sociodemographic and Clinical Factors Associated With Hospitalization and Mortality

Frontiers in public health, 2022-07, Vol.10, p.928174

2022

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ADAMTS-13 in Critically Ill Patients With Septic Syndromes and Noninfectious Systemic Inflammatory Response Syndrome

Shock (Augusta, Ga.), 2015-06, Vol.43 (6), p.556-562

2015

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GRNBoost2 and Arboreto: efficient and scalable inference of gene regulatory networks

A scalable SCENIC workflow for single-cell gene regulatory network analysis

cisTopic: cis-regulatory topic modeling on single-cell ATAC-seq data

Phenotype molding of stromal cells in the lung tumor microenvironment

A Single-Cell Transcriptome Atlas of the Aging Drosophila Brain

Toward Minimal Residual Disease-Directed Therapy in Melanoma

Mapping gene regulatory networks from single-cell omics data

Identification of genomic enhancers through spatial integration of single‐cell transcriptomics and epigenomics

Comparative oncogenomics identifies tyrosine kinase FES as a tumor suppressor in melanoma

Identification of expression patterns in the progression of disease stages by integration of transcriptomic data

SCENIC: single-cell regulatory network inference and clustering

Functional Gene Networks: R/Bioc package to generate and analyse gene networks derived from functional enrichment and clustering

Decoding gene regulation in the fly brain

The transcription factor Grainy head primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes

Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd

Identification of Novel Direct Targets of Drosophila Sine Oculis by Integration of Genome-wide Data Sets

Identification of novel direct targets of Drosophila Sine oculis and Eyes absent by integration of genome-wide data sets

The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes

Analyse multiple disease subtypes and build associated gene networks using genome-wide expression profiles

Combined analysis of genome-wide expression and copy number profiles to identify key altered genomic regions in cancer

Identification of expression patterns in the progression of disease stages by integration of transcriptomic data

Epigenetic Silencing of BCL2, ETS1, IL27RA and DICER1 in Low-Risk MDS Patients

Gene Expression Analysis and Profiling of Microarrays Data and RNA-Sequencing Data

Understanding the COVID-19 Pandemic in Nursing Homes (Aragón, Spain): Sociodemographic and Clinical Factors Associated With Hospitalization and Mortality

ADAMTS-13 in Critically Ill Patients With Septic Syndromes and Noninfectious Systemic Inflammatory Response Syndrome

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