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NanoCaller for accurate detection of SNPs and indels in difficult-to-map regions from long-read sequencing by haplotype-aware deep neural networks

Genome Biology, 2021-09, Vol.22 (1), p.261-33, Article 261

2021

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A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing

Nature communications, 2024-02, Vol.15 (1), p.1448-1448, Article 1448

2024

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Transformer-based DNA methylation detection on ionic signals from Oxford Nanopore sequencing data

Quantitative biology, 2023, Vol.11 (3), p.287-296

2023

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Assessing the Expression of Long INterspersed Elements (LINEs) via Long-Read Sequencing in Diverse Human Tissues and Cell Lines

Genes, 2023-09, Vol.14 (10), p.1893

2023

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A survey of algorithms for the detection of genomic structural variants from long-read sequencing data

Nature methods, 2023-08, Vol.20 (8), p.1143

2023

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Classification of integers based on residue classes via modern deep learning algorithms

Patterns (New York, N.Y.), 2023-12, Vol.4 (12), p.100860-100860, Article 100860

2023

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PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions

Cell genomics, 2022-05, Vol.2 (5), p.100129-100129, Article 100129

2022

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Car Parking Vacancy Detection and Its Application in 24-Hour Statistical Analysis

2012 10th International Conference on Frontiers of Information Technology, 2012, p.84-90

2012

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PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions

Cell genomics, 2022-05, Vol.2 (5), p.100129

2022

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Cost-Effective Single-Camera Multi-Car Parking Monitoring and Vacancy Detection towards Real-World Parking Statistics and Real-Time Reporting

Neural Information Processing, p.506-515

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Dna Methylation
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High-Throughput Nucleotide Sequencing - Methods
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NanoCaller for accurate detection of SNPs and indels in difficult-to-map regions from long-read sequencing by haplotype-aware deep neural networks

A signal processing and deep learning framework for methylation detection using Oxford Nanopore sequencing

Transformer-based DNA methylation detection on ionic signals from Oxford Nanopore sequencing data

Assessing the Expression of Long INterspersed Elements (LINEs) via Long-Read Sequencing in Diverse Human Tissues and Cell Lines

A survey of algorithms for the detection of genomic structural variants from long-read sequencing data

Classification of integers based on residue classes via modern deep learning algorithms

PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions

Car Parking Vacancy Detection and Its Application in 24-Hour Statistical Analysis

PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions

Cost-Effective Single-Camera Multi-Car Parking Monitoring and Vacancy Detection towards Real-World Parking Statistics and Real-Time Reporting

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