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A Biophysical Perspective on Enzyme Catalysis

Biochemistry (Easton), 2019-02, Vol.58 (6), p.438-449

Agarwal, Pratul K

2019

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Evolutionarily conserved linkage between enzyme fold, flexibility, and catalysis

PLoS biology, 2011-11, Vol.9 (11), p.e1001193

2011

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AP-endonuclease 1 sculpts DNA through an anchoring tyrosine residue on the DNA intercalating loop

Nucleic acids research, 2020-07, Vol.48 (13), p.7345

2020

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Protein Conformational Populations and Functionally Relevant Substates

Accounts of chemical research, 2014-01, Vol.47 (1), p.149-156

2014

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Role of Protein Dynamics in Reaction Rate Enhancement by Enzymes

Journal of the American Chemical Society, 2005-11, Vol.127 (43), p.15248-15256

Agarwal, Pratul K

2005

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Nucleotide substrate binding characterization in human pancreatic-type ribonucleases

PloS one, 2019-08, Vol.14 (8), p.e0220037-e0220037

2019

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Mechanism of nucleotide discrimination by the translesion synthesis polymerase Rev1

Nature communications, 2022-05, Vol.13 (1), p.2876-2876, Article 2876

2022

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Allosteric communication in class A β-lactamases occurs via cooperative coupling of loop dynamics

eLife, 2021-03, Vol.10

2021

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Enzymes: An integrated view of structure, dynamics and function

Microbial cell factories, 2006-01, Vol.5 (1), p.2-2, Article 2

Agarwal, Pratul K

2006

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Differential Substrate Recognition by Maltose Binding Proteins Influenced by Structure and Dynamics

Biochemistry (Easton), 2018-10, Vol.57 (40), p.5864-5876

2018

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Emerging variants of SARS-CoV-2 NSP10 highlight strong functional conservation of its binding to two non-structural proteins, NSP14 and NSP16

eLife, 2023-12, Vol.12

2023

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Future COVID19 surges prediction based on SARS-CoV-2 mutations surveillance

eLife, 2023-01, Vol.12

2023

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Discovering conformational sub-states relevant to protein function

PloS one, 2011-01, Vol.6 (1), p.e15827-e15827

2011

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Network of Coupled Promoting Motions in Enzyme Catalysis

Proceedings of the National Academy of Sciences - PNAS, 2002-03, Vol.99 (5), p.2794-2799

2002

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SARS-CoV-2 Genomes From Oklahoma, United States

Frontiers in genetics, 2021-02, Vol.11, p.612571-612571

2021

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Altered APE1 activity on abasic ribonucleotides is mediated by changes in the nucleoside sugar pucker

Computational and structural biotechnology journal, 2021-01, Vol.19, p.3293-3302

2021

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Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase

Angewandte Chemie (International ed.), 2017-01, Vol.56 (3), p.767-770

International ed. in English, 2017

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Myelin Basic Protein Phospholipid Complexation Likely Competes with Deimination in Experimental Autoimmune Encephalomyelitis Mouse Model

ACS omega, 2020-06, Vol.5 (25), p.15454-15467

2020

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Enzyme Dynamics: Looking Beyond a Single Structure

ChemCatChem, 2020-10, Vol.12 (19), p.4704-4720

2020

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On the Case of the Misplaced Hydrogens

Chembiochem : a European journal of chemical biology, 2021-01, Vol.22 (2), p.288-297

2021

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Electrostatic Switching Controls Channel Dynamics of the Sensor Protein VirB10 in A. tumefaciens Type IV Secretion System

ACS omega, 2020-02, Vol.5 (7), p.3271-3281

2020

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Nuclear Quantum Effects and Enzyme Dynamics in Dihydrofolate Reductase Catalysis

The journal of physical chemistry. B, 2002-03, Vol.106 (12), p.3283-3293

2002

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Ligand-Induced Variations in Structural and Dynamical Properties Within an Enzyme Superfamily

Frontiers in molecular biosciences, 2018-06, Vol.5, p.54-54

2018

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Cis/trans isomerization in HIV-1 capsid protein catalyzed by cyclophilin A: Insights from computational and theoretical studies

Proteins, structure, function, and bioinformatics, 2004-08, Vol.56 (3), p.449-463

Agarwal, Pratul K.

2004

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Conservation of Dynamics Associated with Biological Function in an Enzyme Superfamily

Structure (London), 2018-03, Vol.26 (3), p.426-436.e3

2018

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A Biophysical Perspective on Enzyme Catalysis

Evolutionarily conserved linkage between enzyme fold, flexibility, and catalysis

AP-endonuclease 1 sculpts DNA through an anchoring tyrosine residue on the DNA intercalating loop

Protein Conformational Populations and Functionally Relevant Substates

Role of Protein Dynamics in Reaction Rate Enhancement by Enzymes

Nucleotide substrate binding characterization in human pancreatic-type ribonucleases

Mechanism of nucleotide discrimination by the translesion synthesis polymerase Rev1

Allosteric communication in class A β-lactamases occurs via cooperative coupling of loop dynamics

Enzymes: An integrated view of structure, dynamics and function

Differential Substrate Recognition by Maltose Binding Proteins Influenced by Structure and Dynamics

Emerging variants of SARS-CoV-2 NSP10 highlight strong functional conservation of its binding to two non-structural proteins, NSP14 and NSP16

Future COVID19 surges prediction based on SARS-CoV-2 mutations surveillance

Discovering conformational sub-states relevant to protein function

Network of Coupled Promoting Motions in Enzyme Catalysis

SARS-CoV-2 Genomes From Oklahoma, United States

Altered APE1 activity on abasic ribonucleotides is mediated by changes in the nucleoside sugar pucker

Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase

Myelin Basic Protein Phospholipid Complexation Likely Competes with Deimination in Experimental Autoimmune Encephalomyelitis Mouse Model

Enzyme Dynamics: Looking Beyond a Single Structure

On the Case of the Misplaced Hydrogens

Electrostatic Switching Controls Channel Dynamics of the Sensor Protein VirB10 in A. tumefaciens Type IV Secretion System

Nuclear Quantum Effects and Enzyme Dynamics in Dihydrofolate Reductase Catalysis

Ligand-Induced Variations in Structural and Dynamical Properties Within an Enzyme Superfamily

Cis/trans isomerization in HIV-1 capsid protein catalyzed by cyclophilin A: Insights from computational and theoretical studies

Conservation of Dynamics Associated with Biological Function in an Enzyme Superfamily

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