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The interplay of 3D genome organization with UV-induced DNA damage and repair

The Journal of biological chemistry, 2023-05, Vol.299 (5), p.104679, Article 104679

2023

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Downregulated NPAS4 in multiple brain regions is associated with major depressive disorder

Scientific reports, 2023-12, Vol.13 (1), p.21596-21596, Article 21596

2023

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PHACTboost: A Phylogeny-Aware Pathogenicity Predictor for Missense Mutations via Boosting

Molecular biology and evolution, 2024-07, Vol.41 (7)

2024

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Boquila: NGS read simulator to eliminate read nucleotide bias in sequence analysis

Turkish journal of biology, 2023-01, Vol.47 (2), p.158-157

2023

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Structural basis of frizzled 7 activation and allosteric regulation

Nature communications, 2024-08, Vol.15 (1), p.7422-15, Article 7422

2024

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Cross-species investigation into the requirement of XPA for nucleotide excision repair

Nucleic acids research, 2024-01, Vol.52 (2), p.677-689

2024

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Common and selective signal transduction mechanisms of GPCRs

Progress in molecular biology and translational science, 2023, Vol.195, p.89-100

2023

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Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs

Nature communications, 2019-01, Vol.10 (1), p.309-11, Article 309

2019

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Evolutionary association of receptor-wide amino acids with G protein-coupling selectivity in aminergic GPCRs

Life science alliance, 2022-10, Vol.5 (10), p.e202201439

2022

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Dynamic maps of UV damage formation and repair for the human genome

Proceedings of the National Academy of Sciences - PNAS, 2017-06, Vol.114 (26), p.6758-6763

2017

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Phylogenetic analysis of SARS-CoV-2 genomes in Turkey

Turkish journal of biology, 2020-01, Vol.44 (3), p.146-156

2020

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SURF1 related Leigh syndrome: Clinical and molecular findings of 16 patients from Turkey

Molecular genetics and metabolism reports, 2020-12, Vol.25, p.100657-100657, Article 100657

2020

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Sibling rivalry among the ZBTB transcription factor family: homodimers versus heterodimers

Life science alliance, 2022-11, Vol.5 (11), p.e202201474

2022

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Molecular mechanisms and genomic maps of DNA excision repair in Escherichia coli and humans

The Journal of biological chemistry, 2017-09, Vol.292 (38), p.15588-15597

2017

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Genome‐wide Excision Repair Map of Cyclobutane Pyrimidine Dimers in Arabidopsis and the Roles of CSA1 and CSA2 Proteins in Transcription‐coupled Repair

Photochemistry and photobiology, 2022-05, Vol.98 (3), p.707-712

2022

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Genome-wide mapping of nucleotide excision repair with XR-seq

Nature protocols, 2019-01, Vol.14 (1), p.248-282

2019

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Effects of replication domains on genome-wide UV-induced DNA damage and repair

PLoS genetics, 2022-09, Vol.18 (9), p.e1010426

2022

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Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns

Nature communications, 2018-04, Vol.9 (1), p.1503-8, Article 1503

2018

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The Mutation Profile of SARS-CoV-2 Is Primarily Shaped by the Host Antiviral Defense

Viruses, 2021-03, Vol.13 (3), p.394

2021

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Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues

Proceedings of the National Academy of Sciences - PNAS, 2018-05, Vol.115 (21), p.E4777-E4785

2018

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Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes

PLoS computational biology, 2016-04, Vol.12 (4), p.e1004862-e1004862

2016

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Global repair is the primary nucleotide excision repair subpathway for the removal of pyrimidine-pyrimidone (6-4) damage from the Arabidopsis genome

Scientific reports, 2024-02, Vol.14 (1), p.3308-3308, Article 3308

2024

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Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events

BMC genomics, 2021-08, Vol.22 (1), p.600-600, Article 600

2021

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Phylostat: a web-based tool to analyze paralogous clade divergence in phylogenetic trees

Turkish journal of biology, 2021-01, Vol.45 (6), p.667-673

2021

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Class III Histidine Kinases: a Recently Accessorized Kinase Domain in Putative Modulators of Type IV Pilus-Based Motility

Journal of bacteriology, 2017-09, Vol.199 (18)

2017

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The interplay of 3D genome organization with UV-induced DNA damage and repair

Downregulated NPAS4 in multiple brain regions is associated with major depressive disorder

PHACTboost: A Phylogeny-Aware Pathogenicity Predictor for Missense Mutations via Boosting

Boquila: NGS read simulator to eliminate read nucleotide bias in sequence analysis

Structural basis of frizzled 7 activation and allosteric regulation

Cross-species investigation into the requirement of XPA for nucleotide excision repair

Common and selective signal transduction mechanisms of GPCRs

Differential damage and repair of DNA-adducts induced by anti-cancer drug cisplatin across mouse organs

Evolutionary association of receptor-wide amino acids with G protein-coupling selectivity in aminergic GPCRs

Dynamic maps of UV damage formation and repair for the human genome

Phylogenetic analysis of SARS-CoV-2 genomes in Turkey

SURF1 related Leigh syndrome: Clinical and molecular findings of 16 patients from Turkey

Sibling rivalry among the ZBTB transcription factor family: homodimers versus heterodimers

Molecular mechanisms and genomic maps of DNA excision repair in Escherichia coli and humans

Genome‐wide Excision Repair Map of Cyclobutane Pyrimidine Dimers in Arabidopsis and the Roles of CSA1 and CSA2 Proteins in Transcription‐coupled Repair

Genome-wide mapping of nucleotide excision repair with XR-seq

Effects of replication domains on genome-wide UV-induced DNA damage and repair

Genome-wide excision repair in Arabidopsis is coupled to transcription and reflects circadian gene expression patterns

The Mutation Profile of SARS-CoV-2 Is Primarily Shaped by the Host Antiviral Defense

Cisplatin-DNA adduct repair of transcribed genes is controlled by two circadian programs in mouse tissues

Cache Domains That are Homologous to, but Different from PAS Domains Comprise the Largest Superfamily of Extracellular Sensors in Prokaryotes

Global repair is the primary nucleotide excision repair subpathway for the removal of pyrimidine-pyrimidone (6-4) damage from the Arabidopsis genome

Comparative analyses of two primate species diverged by more than 60 million years show different rates but similar distribution of genome-wide UV repair events

Phylostat: a web-based tool to analyze paralogous clade divergence in phylogenetic trees

Class III Histidine Kinases: a Recently Accessorized Kinase Domain in Putative Modulators of Type IV Pilus-Based Motility

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