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Oligonucleotide analysis by hydrophilic interaction liquid chromatography-mass spectrometry in the absence of ion-pair reagents

Journal of Chromatography A, 2019-06, Vol.1595, p.39-48

2019

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Novel ribonuclease activity of cusativin from Cucumis sativus for mapping nucleoside modifications in RNA

Analytical and bioanalytical chemistry, 2017-09, Vol.409 (24), p.5645-5654

2017

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tRNA Modification Profiles and Codon-Decoding Strategies in Methanocaldococcus jannaschii

Journal of bacteriology, 2019-05, Vol.201 (9)

2019

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RNA Cleavage Properties of Nucleobase-Specific RNase MC1 and Cusativin Are Determined by the Dinucleotide-Binding Interactions in the Enzyme-Active Site

International journal of molecular sciences, 2022-06, Vol.23 (13), p.7021

2022

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Ionizing radiation and chemical oxidant exposure impacts on Cryptococcus neoformans transfer RNAs

PloS one, 2022-03, Vol.17 (3), p.e0266239-e0266239

2022

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Mass Spectrometry-Based Quantification of Pseudouridine in RNA

Journal of the American Society for Mass Spectrometry, 2011-08, Vol.22 (8), p.1363-1372

2011

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Characterization of UVA-Induced Alterations to Transfer RNA Sequences

Biomolecules (Basel, Switzerland), 2020-11, Vol.10 (11), p.1527

2020

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Bioengineering Novel Chimeric microRNA-34a for Prodrug Cancer Therapy: High-Yield Expression and Purification, and Structural and Functional Characterization

The Journal of pharmacology and experimental therapeutics, 2015-08, Vol.354 (2), p.131-141

2015

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Oxidative Damage to RNA is Altered by the Presence of Interacting Proteins or Modified Nucleosides

Frontiers in molecular biosciences, 2021-07, Vol.8, p.697149-697149

2021

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Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling

BMC genomics, 2008-05, Vol.9 (1), p.220-220

2008

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Characterizing Benzo[a]pyrene Adducts in Transfer RNAs Using Liquid Chromatography Coupled with Tandem Mass Spectrometry (LC-MS/MS)

Biomedicines, 2023-12, Vol.11 (12), p.3270

2023

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Functional Role of Methylation of G518 of the 16S rRNA 530 Loop by GidB in Mycobacterium tuberculosis

Antimicrobial Agents and Chemotherapy, 2013-12, Vol.57 (12), p.6311-6318

2013

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Mapping m6A Sites on HIV-1 RNA Using Oligonucleotide LC-MS/MS

Methods and protocols, 2024-01, Vol.7 (1), p.7

2024

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Ribonuclease activity is a common property of Arabidopsis CCCH-containing zinc-finger proteins

FEBS letters, 2008-07, Vol.582 (17), p.2577-2582

2008

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Abstract 1133 "Effect of antioxidant on post-transcriptional modification of tRNA during UVA oxidation"

The Journal of biological chemistry, 2024-03, Vol.300 (3), p.106518, Article 106518

2024

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Detection of disulfide linkage by chemical derivatization and mass spectrometry

Methods in molecular biology (Clifton, N.J.), 2015, Vol.1255, p.117

Addepalli, Balasubrahmanyam

2015

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Characterization of Genes Encoding Poly(A) Polymerases in Plants: Evidence for Duplication and Functional Specialization

PloS one, 2009-11, Vol.4 (11), p.e8082-e8082

2009

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An Arabidopsis Fip1 Homolog Interacts with RNA and Provides Conceptual Links with a Number of Other Polyadenylation Factor Subunits

The Journal of biological chemistry, 2006-01, Vol.281 (1), p.176-186

2006

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Fast and efficient size exclusion chromatography of adeno associated viral vectors with 2.5 micrometer particle low adsorption columns

Journal of Chromatography A, 2024-01, Vol.1714, p.464587, Article 464587

2024

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Pseudouridine in the Anticodon of Escherichia coli tRNATyr(QΨA) Is Catalyzed by the Dual Specificity Enzyme RluFThis work was supported by NIGMS, National Institutes of Health Grant R01 GM 058843 (to P. A. L.). The authors declare that they have no conflicts of interest with the contents of this article. The content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.▪▪This article contains supplemental Tables S1–

The Journal of biological chemistry, 2016-10, Vol.291 (42), p.22327-22337

2016

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Chemical Amination/Imination of Carbonothiolated Nucleosides During RNA Hydrolysis

Angewandte Chemie International Edition, 2021-02, Vol.60 (8), p.3961-3966

International ed. in English, 2021

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Detection of ribonucleoside modifications by liquid chromatography coupled with mass spectrometry

Biochimica et biophysica acta. Gene regulatory mechanisms, 2019-03, Vol.1862 (3), p.280-290

2019

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Identification of the amino acids associated with the novel ribonuclease activity of cusativin via protein engineering and LC‐MS

The FASEB journal, 2020-04, Vol.34 (S1), p.1-1

2020

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Improved RNA modification mapping of cellular non-coding RNAs using C- and U-specific RNases

Analyst (London), 2020-02, Vol.145 (3), p.816-827

2020

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Locating chemical modifications in RNA sequences through ribonucleases and LC-MS based analysis

Methods in enzymology, 2021, Vol.658, p.1-24

2021

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Oligonucleotide analysis by hydrophilic interaction liquid chromatography-mass spectrometry in the absence of ion-pair reagents

Novel ribonuclease activity of cusativin from Cucumis sativus for mapping nucleoside modifications in RNA

tRNA Modification Profiles and Codon-Decoding Strategies in Methanocaldococcus jannaschii

RNA Cleavage Properties of Nucleobase-Specific RNase MC1 and Cusativin Are Determined by the Dinucleotide-Binding Interactions in the Enzyme-Active Site

Ionizing radiation and chemical oxidant exposure impacts on Cryptococcus neoformans transfer RNAs

Mass Spectrometry-Based Quantification of Pseudouridine in RNA

Characterization of UVA-Induced Alterations to Transfer RNA Sequences

Bioengineering Novel Chimeric microRNA-34a for Prodrug Cancer Therapy: High-Yield Expression and Purification, and Structural and Functional Characterization

Oxidative Damage to RNA is Altered by the Presence of Interacting Proteins or Modified Nucleosides

Arabidopsis mRNA polyadenylation machinery: comprehensive analysis of protein-protein interactions and gene expression profiling

Characterizing Benzo[a]pyrene Adducts in Transfer RNAs Using Liquid Chromatography Coupled with Tandem Mass Spectrometry (LC-MS/MS)

Functional Role of Methylation of G518 of the 16S rRNA 530 Loop by GidB in Mycobacterium tuberculosis

Mapping m6A Sites on HIV-1 RNA Using Oligonucleotide LC-MS/MS

Ribonuclease activity is a common property of Arabidopsis CCCH-containing zinc-finger proteins

Abstract 1133 "Effect of antioxidant on post-transcriptional modification of tRNA during UVA oxidation"

Detection of disulfide linkage by chemical derivatization and mass spectrometry

Characterization of Genes Encoding Poly(A) Polymerases in Plants: Evidence for Duplication and Functional Specialization

An Arabidopsis Fip1 Homolog Interacts with RNA and Provides Conceptual Links with a Number of Other Polyadenylation Factor Subunits

Fast and efficient size exclusion chromatography of adeno associated viral vectors with 2.5 micrometer particle low adsorption columns

Chemical Amination/Imination of Carbonothiolated Nucleosides During RNA Hydrolysis

Detection of ribonucleoside modifications by liquid chromatography coupled with mass spectrometry

Identification of the amino acids associated with the novel ribonuclease activity of cusativin via protein engineering and LC‐MS

Improved RNA modification mapping of cellular non-coding RNAs using C- and U-specific RNases

Locating chemical modifications in RNA sequences through ribonucleases and LC-MS based analysis

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