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Mitochondrial cytochrome c oxidase biogenesis: Recent developments

Seminars in cell & developmental biology, 2018-04, Vol.76, p.163-178

2018

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PeSTo: parameter-free geometric deep learning for accurate prediction of protein binding interfaces

Nature communications, 2023-04, Vol.14 (1), p.2175-2175, Article 2175

2023

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A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessments

Proteins, structure, function, and bioinformatics, 2019-12, Vol.87 (12), p.1100-1112

2019

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Nucleo-cytosolic Shuttling of ARGONAUTE1 Prompts a Revised Model of the Plant MicroRNA Pathway

Molecular cell, 2018-02, Vol.69 (4), p.709-719.e5

2018

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Inositol pyrophosphates promote the interaction of SPX domains with the coiled-coil motif of PHR transcription factors to regulate plant phosphate homeostasis

Nature communications, 2021-01, Vol.12 (1), p.384-384, Article 384

2021

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Assessment of hard target modeling in CASP12 reveals an emerging role of alignment‐based contact prediction methods

Proteins, structure, function, and bioinformatics, 2018-03, Vol.86 (S1), p.97-112

2018

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The Nobel Prize in Chemistry: past, present, and future of AI in biology

Communications biology, 2024-10, Vol.7 (1), p.1409-3, Article 1409

Abriata, Luciano A.

2024

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Signal Sensing and Transduction by Histidine Kinases as Unveiled through Studies on a Temperature Sensor

Accounts of chemical research, 2017-06, Vol.50 (6), p.1359-1366

2017

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How structural and physicochemical determinants shape sequence constraints in a functional enzyme

PloS one, 2015-02, Vol.10 (2), p.e0118684

2015

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Molecular Effects of Concentrated Solutes on Protein Hydration, Dynamics, and Electrostatics

Biophysical journal, 2016-08, Vol.111 (4), p.743-755

2016

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Assessment of transferable forcefields for protein simulations attests improved description of disordered states and secondary structure propensities, and hints at multi-protein systems as the next challenge for optimization

Computational and structural biotechnology journal, 2021-01, Vol.19, p.2626-2636

2021

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Assessing the potential of atomistic molecular dynamics simulations to probe reversible protein-protein recognition and binding

Scientific reports, 2015-05, Vol.5 (1), p.10549-10549, Article 10549

2015

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A minimalistic cyclic ice-binding peptide from phage display

Nature communications, 2021-05, Vol.12 (1), p.2675-2675, Article 2675

2021

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Building blocks for commodity augmented reality-based molecular visualization and modeling in web browsers

PeerJ. Computer science, 2020-02, Vol.6, p.e260-e260, Article e260

Abriata, Luciano A

2020

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Context-aware geometric deep learning for protein sequence design

Nature communications, 2024-07, Vol.15 (1), p.6273-10, Article 6273

2024

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Loop recognition and copper-mediated disulfide reduction underpin metal site assembly of CuA in human cytochrome oxidase

Proceedings of the National Academy of Sciences - PNAS, 2015-09, Vol.112 (38), p.11771-11776

2015

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Population Structure, Molecular Epidemiology, and β-Lactamase Diversity among Stenotrophomonas maltophilia Isolates in the United States

mBio, 2019-07, Vol.10 (4)

2019

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Dynamics of CLIMP-63 S-acylation control ER morphology

Nature communications, 2023-01, Vol.14 (1), p.264-264, Article 264

2023

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A coiled coil switch mediates cold sensing by the thermosensory protein DesK

Molecular microbiology, 2015-10, Vol.98 (2), p.258-271

2015

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Flexibility of the metal-binding region in apo-cupredoxins

Proceedings of the National Academy of Sciences - PNAS, 2012-06, Vol.109 (24), p.9254-9259

2012

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Transmembrane Prolines Mediate Signal Sensing and Decoding in Bacillus subtilis DesK Histidine Kinase

mBio, 2019-11, Vol.10 (6)

2019

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Web Apps Come of Age for Molecular Sciences

Informatics (Basel), 2017-09, Vol.4 (3), p.28

Abriata, Luciano

2017

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How Technologies Assisted Science Learning at Home During the COVID-19 Pandemic

DNA and cell biology, 2022-01, Vol.41 (1), p.19-24

Abriata, Luciano A

2022

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Dissecting the Effects of Concentrated Carbohydrate Solutions on Protein Diffusion, Hydration, and Internal Dynamics

The journal of physical chemistry. B, 2014-05, Vol.118 (20), p.5310-5321

2014

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A Simple Spreadsheet Program To Simulate and Analyze the Far-UV Circular Dichroism Spectra of Proteins

Journal of chemical education, 2011-09, Vol.88 (9), p.1268-1273

Abriata, Luciano A

2011

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Mitochondrial cytochrome c oxidase biogenesis: Recent developments

PeSTo: parameter-free geometric deep learning for accurate prediction of protein binding interfaces

A further leap of improvement in tertiary structure prediction in CASP13 prompts new routes for future assessments

Nucleo-cytosolic Shuttling of ARGONAUTE1 Prompts a Revised Model of the Plant MicroRNA Pathway

Inositol pyrophosphates promote the interaction of SPX domains with the coiled-coil motif of PHR transcription factors to regulate plant phosphate homeostasis

Assessment of hard target modeling in CASP12 reveals an emerging role of alignment‐based contact prediction methods

The Nobel Prize in Chemistry: past, present, and future of AI in biology

Signal Sensing and Transduction by Histidine Kinases as Unveiled through Studies on a Temperature Sensor

How structural and physicochemical determinants shape sequence constraints in a functional enzyme

Molecular Effects of Concentrated Solutes on Protein Hydration, Dynamics, and Electrostatics

Assessment of transferable forcefields for protein simulations attests improved description of disordered states and secondary structure propensities, and hints at multi-protein systems as the next challenge for optimization

Assessing the potential of atomistic molecular dynamics simulations to probe reversible protein-protein recognition and binding

A minimalistic cyclic ice-binding peptide from phage display

Building blocks for commodity augmented reality-based molecular visualization and modeling in web browsers

Context-aware geometric deep learning for protein sequence design

Loop recognition and copper-mediated disulfide reduction underpin metal site assembly of CuA in human cytochrome oxidase

Population Structure, Molecular Epidemiology, and β-Lactamase Diversity among Stenotrophomonas maltophilia Isolates in the United States

Dynamics of CLIMP-63 S-acylation control ER morphology

A coiled coil switch mediates cold sensing by the thermosensory protein DesK

Flexibility of the metal-binding region in apo-cupredoxins

Transmembrane Prolines Mediate Signal Sensing and Decoding in Bacillus subtilis DesK Histidine Kinase

Web Apps Come of Age for Molecular Sciences

How Technologies Assisted Science Learning at Home During the COVID-19 Pandemic

Dissecting the Effects of Concentrated Carbohydrate Solutions on Protein Diffusion, Hydration, and Internal Dynamics

A Simple Spreadsheet Program To Simulate and Analyze the Far-UV Circular Dichroism Spectra of Proteins

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