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Systems-based approaches to unravel multi-species microbial community functioning

Computational and structural biotechnology journal, 2015-01, Vol.13 (C), p.24-32

Abram, Florence

2015

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Application of plasma activated water for decontamination of alfalfa and mung bean seeds

Food microbiology, 2021-06, Vol.96, p.103708, Article 103708

2021

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Editorial: Using Genomics, Metagenomics and Other "Omics" to Assess Valuable Microbial Ecosystem Services and Novel Biotechnological Applications

Frontiers in microbiology, 2019-02, Vol.10, p.151-151

2019

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Reactor configuration influences microbial community structure during high-rate, low-temperature anaerobic treatment of dairy wastewater

Bioresource technology, 2020-07, Vol.307, p.123221-123221, Article 123221

2020

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Impacts of metal stress on extracellular microbial products, and potential for selective metal recovery

Ecotoxicology and environmental safety, 2023-03, Vol.252, p.114604-114604, Article 114604

2023

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The impact of noise and missing fragmentation cleavages on de novo peptide identification algorithms

Computational and structural biotechnology journal, 2022-01, Vol.20, p.1402-1412

2022

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Critical evaluation of the use of artificial data for machine learning based de novo peptide identification

Computational and structural biotechnology journal, 2023-01, Vol.21, p.2732-2743

2023

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Combined Stochastic and Deterministic Processes Drive Community Assembly of Anaerobic Microbiomes During Granule Flotation

Frontiers in microbiology, 2021-05, Vol.12, p.666584-666584

2021

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Linking Microbial Community Structure and Function During the Acidified Anaerobic Digestion of Grass

Frontiers in microbiology, 2018-03, Vol.9, p.540

2018

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Functional responses and adaptation of mesophilic microbial communities to psychrophilic anaerobic digestion

FEMS microbiology ecology, 2015-12, Vol.91 (12), p.1

2015

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An in-depth evaluation of metagenomic classifiers for soil microbiomes

Environmental microbiome, 2024-03, Vol.19 (1), p.19-19, Article 19

2024

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Adhesive proteins of stalked and acorn barnacles display homology with low sequence similarities

PloS one, 2014-10, Vol.9 (10), p.e108902

2014

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Reproducible, high-yielding, biological caproate production from food waste using a single-phase anaerobic reactor system

Biotechnology for biofuels, 2018-04, Vol.11 (1), Article 108

2018

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A Functional Approach To Uncover the Low-Temperature Adaptation Strategies of the Archaeon Methanosarcina barkeri

Applied and Environmental Microbiology, 2013-07, Vol.79 (14), p.4210-4219

2013

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Characterization of Environmentally Persistent Escherichia coli Isolates Leached from an Irish Soil

Applied and Environmental Microbiology, 2010-04, Vol.76 (7), p.2175-2180

2010

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Survival of Escherichia coli and Listeria innocua on Lettuce after Irrigation with Contaminated Water in a Temperate Climate

Foods, 2021-09, Vol.10 (9), p.2072

2021

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Absence of Curli in Soil-Persistent Escherichia coli Is Mediated by a C-di-GMP Signaling Defect and Suggests Evidence of Biofilm-Independent Niche Specialization

Frontiers in microbiology, 2018-06, Vol.9, p.1340-1340

2018

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Easy phylotyping of Escherichia coli via the EzClermont web app and command-line tool

Access microbiology, 2020-09, Vol.2 (9), p.acmi000143-acmi000143

2020

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The Survival of Salmonella Senftenberg, Escherichia coli O157:H7, Listeria monocytogenes, Enterococcus faecalis and Clostridium sporogenes in Sandy and Clay Loam Textured Soils When Applied in Bovine Slurry or Unpasteurised Digestate and the Run-Off Rate for a Test Bacterium, Listeria innocua, When Applied to Grass in Slurry and Digestate

Frontiers in sustainable food systems, 2022-03, Vol.6

2022

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Application of a Novel Hybrid CNN-GNN for Peptide Ion Encoding

Journal of proteome research, 2023-02, Vol.22 (2), p.323-333

2023

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Exploring mixed microbial community functioning: recent advances in metaproteomics

FEMS microbiology ecology, 2012-05, Vol.80 (2), p.265-280

2012

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Simultaneous adsorption and biodegradation of trichloroethylene occurs in a biochar packed column treating contaminated landfill leachate

Journal of hazardous materials, 2021-02, Vol.403, p.123676, Article 123676

2021

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Microbial Contamination of Fresh Produce: What, Where, and How?

Comprehensive reviews in food science and food safety, 2019-11, Vol.18 (6), p.1727-1750

2019

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Pyrolysed waste materials show potential for remediation of trichloroethylene-contaminated water

Journal of hazardous materials, 2020-05, Vol.390, p.121909, Article 121909

2020

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Stabilisation of spent mushroom substrate for application as a plant growth-promoting organic amendment

Journal of environmental management, 2017-07, Vol.196, p.476-486

2017

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Systems-based approaches to unravel multi-species microbial community functioning

Application of plasma activated water for decontamination of alfalfa and mung bean seeds

Editorial: Using Genomics, Metagenomics and Other "Omics" to Assess Valuable Microbial Ecosystem Services and Novel Biotechnological Applications

Reactor configuration influences microbial community structure during high-rate, low-temperature anaerobic treatment of dairy wastewater

Impacts of metal stress on extracellular microbial products, and potential for selective metal recovery

The impact of noise and missing fragmentation cleavages on de novo peptide identification algorithms

Critical evaluation of the use of artificial data for machine learning based de novo peptide identification

Combined Stochastic and Deterministic Processes Drive Community Assembly of Anaerobic Microbiomes During Granule Flotation

Linking Microbial Community Structure and Function During the Acidified Anaerobic Digestion of Grass

Functional responses and adaptation of mesophilic microbial communities to psychrophilic anaerobic digestion

An in-depth evaluation of metagenomic classifiers for soil microbiomes

Adhesive proteins of stalked and acorn barnacles display homology with low sequence similarities

Reproducible, high-yielding, biological caproate production from food waste using a single-phase anaerobic reactor system

A Functional Approach To Uncover the Low-Temperature Adaptation Strategies of the Archaeon Methanosarcina barkeri

Characterization of Environmentally Persistent Escherichia coli Isolates Leached from an Irish Soil

Survival of Escherichia coli and Listeria innocua on Lettuce after Irrigation with Contaminated Water in a Temperate Climate

Absence of Curli in Soil-Persistent Escherichia coli Is Mediated by a C-di-GMP Signaling Defect and Suggests Evidence of Biofilm-Independent Niche Specialization

Easy phylotyping of Escherichia coli via the EzClermont web app and command-line tool

Application of a Novel Hybrid CNN-GNN for Peptide Ion Encoding

Exploring mixed microbial community functioning: recent advances in metaproteomics

Simultaneous adsorption and biodegradation of trichloroethylene occurs in a biochar packed column treating contaminated landfill leachate

Microbial Contamination of Fresh Produce: What, Where, and How?

Pyrolysed waste materials show potential for remediation of trichloroethylene-contaminated water

Stabilisation of spent mushroom substrate for application as a plant growth-promoting organic amendment

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