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The design and analysis of transposon insertion sequencing experiments

Nature reviews. Microbiology, 2016-02, Vol.14 (2), p.119-128

2016

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Cycling empirical antibiotic therapy in hospitals: meta-analysis and models

PLoS pathogens, 2014-06, Vol.10 (6), p.e1004225-e1004225

2014

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Transposon-insertion sequencing screens unveil requirements for EHEC growth and intestinal colonization

PLoS pathogens, 2019-08, Vol.15 (8), p.e1007652-e1007652

2019

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Analysis of Bottlenecks in Experimental Models of Infection

PLoS pathogens, 2015-06, Vol.11 (6), p.e1004823-e1004823

2015

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ARTIST: high-resolution genome-wide assessment of fitness using transposon-insertion sequencing

PLoS genetics, 2014-11, Vol.10 (11), p.e1004782

2014

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Drug-target binding quantitatively predicts optimal antibiotic dose levels in quinolones

PLoS computational biology, 2020-08, Vol.16 (8), p.e1008106

2020

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Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression

Genes & development, 2009-01, Vol.23 (1), p.93-104

2009

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Bi-modal distribution of the second messenger c-di-GMP controls cell fate and asymmetry during the caulobacter cell cycle

PLoS genetics, 2013-09, Vol.9 (9), p.e1003744-e1003744

2013

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Deciphering the landscape of host barriers to Listeria monocytogenes infection

Proceedings of the National Academy of Sciences - PNAS, 2017-06, Vol.114 (24), p.6334-6339

2017

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Activation of the Diguanylate Cyclase PleD by Phosphorylation-mediated Dimerization

The Journal of biological chemistry, 2007-10, Vol.282 (40), p.29170-29177

2007

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Sequence tag-based analysis of microbial population dynamics

Nature methods, 2015-03, Vol.12 (3), p.223

2015

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Reaction Kinetic Models of Antibiotic Heteroresistance

International journal of molecular sciences, 2019-08, Vol.20 (16), p.3965

2019

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Deciphering the assembly of the Yersinia type III secretion injectisome

The EMBO journal, 2010-06, Vol.29 (11), p.1928-1940

2010

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The bacterial magnesium transporter MgtA reveals highly selective interaction with specific cardiolipin species

Biochimica et biophysica acta. Molecular cell research, 2024-01, Vol.1871 (1), p.119614-119614, Article 119614

2024

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The Infectious Dose Shapes Vibrio cholerae Within-Host Dynamics

mSystems, 2021-12, Vol.6 (6), p.e0065921-e0065921

2021

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Mechanisms of antibiotic action shape the fitness landscapes of resistance mutations

Computational and structural biotechnology journal, 2022-01, Vol.20, p.4688-4703

2022

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Chemoproteomic profiling of host and pathogen enzymes active in cholera

Nature chemical biology, 2016-04, Vol.12 (4), p.268

2016

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RESTAMP – Rate estimates by sequence-tag analysis of microbial populations

Computational and structural biotechnology journal, 2021-01, Vol.19, p.1035-1051

2021

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Selection or drift: The population biology underlying transposon insertion sequencing experiments

Computational and structural biotechnology journal, 2020-01, Vol.18, p.791-804

2020

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ARTIST: High-Resolution Genome-Wide Assessment of Fitness Using Transposon-Insertion Sequencing: e1004782

PLoS genetics, 2014-11, Vol.10 (11)

2014

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Bi-modal Distribution of the Second Messenger c-di-GMP Controls Cell Fate and Asymmetry during the Caulobacter Cell Cycle: e1003744

PLoS genetics, 2013-09, Vol.9 (9)

2013

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A single step three-strain in vivo Gateway reaction

Plasmid, 2021-11, Vol.118, p.102608-102608, Article 102608

2021

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A single step three-strain in vivo Gateway reaction

Plasmid, 2021

2021

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The bacterial magnesium transporter MgtA reveals highly selective interaction with specific cardiolipin species

Biochimica et biophysica acta. Molecular cell research, 2023

2023

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Cell cycle transition from S-phase to G1 in Caulobacter is mediated by ancestral virulence regulators

Nature communications, 2014-06, Vol.5 (1), p.4081-4081, Article 4081

2014

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The design and analysis of transposon insertion sequencing experiments

Cycling empirical antibiotic therapy in hospitals: meta-analysis and models

Transposon-insertion sequencing screens unveil requirements for EHEC growth and intestinal colonization

Analysis of Bottlenecks in Experimental Models of Infection

ARTIST: high-resolution genome-wide assessment of fitness using transposon-insertion sequencing

Drug-target binding quantitatively predicts optimal antibiotic dose levels in quinolones

Second messenger-mediated spatiotemporal control of protein degradation regulates bacterial cell cycle progression

Bi-modal distribution of the second messenger c-di-GMP controls cell fate and asymmetry during the caulobacter cell cycle

Deciphering the landscape of host barriers to Listeria monocytogenes infection

Activation of the Diguanylate Cyclase PleD by Phosphorylation-mediated Dimerization

Sequence tag-based analysis of microbial population dynamics

Reaction Kinetic Models of Antibiotic Heteroresistance

Deciphering the assembly of the Yersinia type III secretion injectisome

The bacterial magnesium transporter MgtA reveals highly selective interaction with specific cardiolipin species

The Infectious Dose Shapes Vibrio cholerae Within-Host Dynamics

Mechanisms of antibiotic action shape the fitness landscapes of resistance mutations

Chemoproteomic profiling of host and pathogen enzymes active in cholera

RESTAMP – Rate estimates by sequence-tag analysis of microbial populations

Selection or drift: The population biology underlying transposon insertion sequencing experiments

ARTIST: High-Resolution Genome-Wide Assessment of Fitness Using Transposon-Insertion Sequencing: e1004782

Bi-modal Distribution of the Second Messenger c-di-GMP Controls Cell Fate and Asymmetry during the Caulobacter Cell Cycle: e1003744

A single step three-strain in vivo Gateway reaction

A single step three-strain in vivo Gateway reaction

The bacterial magnesium transporter MgtA reveals highly selective interaction with specific cardiolipin species

Cell cycle transition from S-phase to G1 in Caulobacter is mediated by ancestral virulence regulators

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