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VIRULIGN: fast codon-correct alignment and annotation of viral genomes

Bioinformatics, 2019-05, Vol.35 (10), p.1763-1765

2019

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HIV and tuberculosis co-infection among migrants in Europe: A systematic review on the prevalence, incidence and mortality

PloS one, 2017-09, Vol.12 (9), p.e0185526-e0185526

2017

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Insect-specific viruses in the Parvoviridae family: Genetic lineage characterization and spatiotemporal dynamics of the recently established Brevihamaparvovirus genus

Virus research, 2022-05, Vol.313, p.198728-198728, Article 198728

2022

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Genomic Signature and the Identification of New Sporulation Genes

Journal of Bacteriology, 2013-05, Vol.195 (9), p.2101-2115

2013

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Readdressing the genetic diversity and taxonomy of the Mesoniviridae family, as well as its relationships with other nidoviruses and putative mesonivirus-like viral sequences

Virus research, 2022-05, Vol.313, p.198727-198727, Article 198727

2022

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Molecular footprints of selective pressure in the neuraminidase gene of currently circulating human influenza subtypes and lineages

Virology (New York, N.Y.), 2018-09, Vol.522, p.122-130

2018

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Trends of Transmitted and Acquired Drug Resistance in Europe From 1981 to 2019: A Comparison Between the Populations of Late Presenters and Non-late Presenters

Frontiers in microbiology, 2022-04, Vol.13, p.846943-846943

2022

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Quantifying Differences in the Tempo of Human Immunodeficiency Virus Type 1 Subtype Evolution

Journal of Virology, 2009-12, Vol.83 (24), p.12917-12924

2009

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A Tale of Three Recent Pandemics: Influenza, HIV and SARS-CoV-2

Frontiers in microbiology, 2022-06, Vol.13, p.889643-889643

2022

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Tuberculosis care for migrant patients in Portugal: a mixed methods study with primary healthcare providers

BMC health services research, 2019-04, Vol.19 (1), p.233-233, Article 233

2019

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HIV-1 diversity and pre-treatment drug resistance in the era of integrase inhibitor among newly diagnosed ART-naïve adult patients in Luanda, Angola

Scientific reports, 2024-07, Vol.14 (1), p.15893-10, Article 15893

2024

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MARVEL-minimising the emergence and dissemination of HIV-1 drug resistance in Portuguese-speaking African Countries (PALOP): low-cost portable NGS platform for HIV-1 surveillance in Africa

BMC infectious diseases, 2024-08, Vol.24 (1), p.1-8, Article 884

2024

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Zika genomics urgently need standardized and curated reference sequences

PLoS pathogens, 2017-09, Vol.13 (9), p.e1006528-e1006528

2017

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Applying Next-Generation Sequencing to Track HIV-1 Drug Resistance Mutations Circulating in Portugal

Viruses, 2024-04, Vol.16 (4), p.622

2024

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The Role of Late Presenters in HIV-1 Transmission Clusters in Europe

Viruses, 2023-12, Vol.15 (12), p.2418

2023

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HIV-1 Infection in Cyprus, the Eastern Mediterranean European Frontier: A Densely Sampled Transmission Dynamics Analysis from 1986 to 2012

Scientific reports, 2018-01, Vol.8 (1), p.1702-14, Article 1702

2018

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Serological screening in a large-scale municipal survey in Cascais, Portugal, during the first waves of the COVID-19 pandemic: lessons for future pandemic preparedness efforts

Frontiers in public health, 2024, Vol.12, p.1326125-1326125

2024

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Spectrum of Atazanavir-Selected Protease Inhibitor-Resistance Mutations

Pathogens (Basel), 2022-05, Vol.11 (5), p.546

2022

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Novel HIV-1 recombinants spreading across multiple risk groups in the United Kingdom: the identification and phylogeography of Circulating Recombinant Form (CRF) 50_A1D

PloS one, 2014-01, Vol.9 (1), p.e83337-e83337

2014

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Dynamics and features of transmission clusters of HIV-1 subtypes in the state of São Paulo, Brazil

Frontiers in public health, 2024-06, Vol.12, p.1384512

2024

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Geographic dispersal and genetic diversity of tick-borne phleboviruses (Phenuiviridae, Phlebovirus) as revealed by the analysis of L segment sequences

Ticks and tick-borne diseases, 2019-06, Vol.10 (4), p.942-948

2019

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Phylogenetic analysis as a forensic tool in HIV transmission investigations

AIDS (London), 2018-03, Vol.32 (5), p.543-554

2018

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Recombination Confounds the Early Evolutionary History of Human Immunodeficiency Virus Type 1: Subtype G Is a Circulating Recombinant Form

Journal of Virology, 2007-08, Vol.81 (16), p.8543-8551

2007

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Origin and epidemiological history of HIV-1 CRF14_BG

PloS one, 2011-09, Vol.6 (9), p.e24130-e24130

2011

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VIRULIGN: fast codon-correct alignment and annotation of viral genomes

HIV and tuberculosis co-infection among migrants in Europe: A systematic review on the prevalence, incidence and mortality

Insect-specific viruses in the Parvoviridae family: Genetic lineage characterization and spatiotemporal dynamics of the recently established Brevihamaparvovirus genus

Genomic Signature and the Identification of New Sporulation Genes

Readdressing the genetic diversity and taxonomy of the Mesoniviridae family, as well as its relationships with other nidoviruses and putative mesonivirus-like viral sequences

Molecular footprints of selective pressure in the neuraminidase gene of currently circulating human influenza subtypes and lineages

Trends of Transmitted and Acquired Drug Resistance in Europe From 1981 to 2019: A Comparison Between the Populations of Late Presenters and Non-late Presenters

Quantifying Differences in the Tempo of Human Immunodeficiency Virus Type 1 Subtype Evolution

A Tale of Three Recent Pandemics: Influenza, HIV and SARS-CoV-2

Tuberculosis care for migrant patients in Portugal: a mixed methods study with primary healthcare providers

HIV-1 diversity and pre-treatment drug resistance in the era of integrase inhibitor among newly diagnosed ART-naïve adult patients in Luanda, Angola

MARVEL-minimising the emergence and dissemination of HIV-1 drug resistance in Portuguese-speaking African Countries (PALOP): low-cost portable NGS platform for HIV-1 surveillance in Africa

Zika genomics urgently need standardized and curated reference sequences

Applying Next-Generation Sequencing to Track HIV-1 Drug Resistance Mutations Circulating in Portugal

The Role of Late Presenters in HIV-1 Transmission Clusters in Europe

The International Virus Bioinformatics Meeting 2023

HIV-1 Infection in Cyprus, the Eastern Mediterranean European Frontier: A Densely Sampled Transmission Dynamics Analysis from 1986 to 2012

Serological screening in a large-scale municipal survey in Cascais, Portugal, during the first waves of the COVID-19 pandemic: lessons for future pandemic preparedness efforts

Spectrum of Atazanavir-Selected Protease Inhibitor-Resistance Mutations

Novel HIV-1 recombinants spreading across multiple risk groups in the United Kingdom: the identification and phylogeography of Circulating Recombinant Form (CRF) 50_A1D

Dynamics and features of transmission clusters of HIV-1 subtypes in the state of São Paulo, Brazil

Geographic dispersal and genetic diversity of tick-borne phleboviruses (Phenuiviridae, Phlebovirus) as revealed by the analysis of L segment sequences

Phylogenetic analysis as a forensic tool in HIV transmission investigations

Recombination Confounds the Early Evolutionary History of Human Immunodeficiency Virus Type 1: Subtype G Is a Circulating Recombinant Form

Origin and epidemiological history of HIV-1 CRF14_BG

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