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AGouTI–Flexible Annotation of Genomic and Transcriptomic Intervals

PLoS computational biology, 2023-10, Vol.19 (10), p.e1011527-e1011527

2023

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The Evaluation of SHAPE-MaP RNA Structure Probing Protocols Reveals a Novel Role of Mn2+ in the Detection of 2′-OH Adducts

International journal of molecular sciences, 2023-04, Vol.24 (9), p.7890

2023

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Emerging applications of riboswitches – from antibacterial targets to molecular tools

Journal of applied genetics, 2016-11, Vol.57 (4), p.531-541

2016

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The Role of RNA Secondary Structure in Regulation of Gene Expression in Bacteria

International journal of molecular sciences, 2021-08, Vol.22 (15), p.7845

2021

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Insight into metabolic sensors of nitrosative stress protection in Phytophthora infestans

Frontiers in plant science, 2023-07, Vol.14, p.1148222-1148222

2023

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Comprehensive analysis of microRNA expression profile in malignant glioma tissues

Molecular oncology, 2015-08, Vol.9 (7), p.1324-1340

2015

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Maf1-mediated regulation of yeast RNA polymerase III is correlated with CCA addition at the 3′ end of tRNA precursors

Gene, 2017-05, Vol.612, p.12-18

2017

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Identification of Structural Variants in Two Novel Genomes of Maize Inbred Lines Possibly Related to Glyphosate Tolerance

Plants (Basel), 2020-04, Vol.9 (4), p.523

2020

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The widespread occurrence of tRNA‐derived fragments in Saccharomyces cerevisiae

FEBS open bio, 2016-12, Vol.6 (12), p.1186-1200

2016

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Expression of miRNAs involved in phosphate homeostasis and senescence is altered in glyphosate-treated maize

Acta physiologiae plantarum, 2015-12, Vol.37 (12), Article 265

2015

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A tRNA half modulates translation as stress response in Trypanosoma brucei

Nature communications, 2019-01, Vol.10 (1), p.118-118, Article 118

2019

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The Evaluation of SHAPE-MaP RNA Structure Probing Protocols Reveals a Novel Role of Mn[sup.2+] in the Detection of 2′-OH Adducts

International journal of molecular sciences, 2023-05, Vol.24 (9)

2023

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tRNA-Derived Fragments Target the Ribosome and Function as Regulatory Non-Coding RNA in Haloferax volcanii

Archaea, 2012-01, Vol.2012, p.260909-11

2012

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mRNA-specific translation regulation by a ribosome-associated ncRNA in Haloferax volcanii

Scientific reports, 2018-08, Vol.8 (1), p.12502-13, Article 12502

2018

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Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis

Nucleic acids research, 2012-05, Vol.40 (9), p.4013

2012

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The Evaluation of SHAPE-MaP RNA Structure Probing Protocols Reveals a Novel Role of Mn 2+ in the Detection of 2'-OH Adducts

International journal of molecular sciences, 2023-04, Vol.24 (9)

2023

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Identification of novel non‐coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus

Molecular microbiology, 2005-01, Vol.55 (2), p.469-481

2005

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Changes in expression of miRNAs involved in stress responses and senescence in glyphosate-treated maize

New biotechnology, 2016-07, Vol.33, p.S160-S161

2016

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Is Polymorphism in the Apoptosis and Inflammatory Pathway Genes Associated With a Primary Response to Anti-TNF Therapy in Crohn’s Disease Patients?

Frontiers in pharmacology, 2020-08, Vol.11, p.1207-1207

2020

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RNA polymerase II-binding aptamers in human ACRO1 satellites disrupt transcription in cis

Transcription, 2020-10, Vol.11 (5), p.217-229

2020

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Suitability of high-throughput DMS-probing data for constraining the secondary structure prediction of small RNAs

Biotechnologia (Poznan), 2016, Vol.3, p.161-167

2016

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Efficiency of PacBio long read correction by 2nd generation Illumina sequencing

Genomics (San Diego, Calif.), 2019-01, Vol.111 (1), p.43-49

2019

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An mRNA-Derived Noncoding RNA Targets and Regulates the Ribosome

Molecular cell, 2014-04, Vol.54 (1), p.147-155

2014

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Expression Profiling of a Heterogeneous Population of ncRNAs Employing a Mixed DNA/LNA Microarray

Journal of Nucleic Acids, 2012-01, Vol.2012, p.283560-10

2012

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Evaluation of the Dynamic Structure of DsrA RNA from E. coli and Its Functional Consequences

Journal of biochemistry (Tokyo), 2006-03, Vol.139 (3), p.431-438

2006

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AGouTI–Flexible Annotation of Genomic and Transcriptomic Intervals

The Evaluation of SHAPE-MaP RNA Structure Probing Protocols Reveals a Novel Role of Mn2+ in the Detection of 2′-OH Adducts

Emerging applications of riboswitches – from antibacterial targets to molecular tools

The Role of RNA Secondary Structure in Regulation of Gene Expression in Bacteria

Insight into metabolic sensors of nitrosative stress protection in Phytophthora infestans

Comprehensive analysis of microRNA expression profile in malignant glioma tissues

Maf1-mediated regulation of yeast RNA polymerase III is correlated with CCA addition at the 3′ end of tRNA precursors

Identification of Structural Variants in Two Novel Genomes of Maize Inbred Lines Possibly Related to Glyphosate Tolerance

The widespread occurrence of tRNA‐derived fragments in Saccharomyces cerevisiae

Expression of miRNAs involved in phosphate homeostasis and senescence is altered in glyphosate-treated maize

A tRNA half modulates translation as stress response in Trypanosoma brucei

The Evaluation of SHAPE-MaP RNA Structure Probing Protocols Reveals a Novel Role of Mn[sup.2+] in the Detection of 2′-OH Adducts

tRNA-Derived Fragments Target the Ribosome and Function as Regulatory Non-Coding RNA in Haloferax volcanii

mRNA-specific translation regulation by a ribosome-associated ncRNA in Haloferax volcanii

Revealing stable processing products from ribosome-associated small RNAs by deep-sequencing data analysis

The Evaluation of SHAPE-MaP RNA Structure Probing Protocols Reveals a Novel Role of Mn 2+ in the Detection of 2'-OH Adducts

Identification of novel non‐coding RNAs as potential antisense regulators in the archaeon Sulfolobus solfataricus

Changes in expression of miRNAs involved in stress responses and senescence in glyphosate-treated maize

Is Polymorphism in the Apoptosis and Inflammatory Pathway Genes Associated With a Primary Response to Anti-TNF Therapy in Crohn’s Disease Patients?

RNA polymerase II-binding aptamers in human ACRO1 satellites disrupt transcription in cis

Suitability of high-throughput DMS-probing data for constraining the secondary structure prediction of small RNAs

Efficiency of PacBio long read correction by 2nd generation Illumina sequencing

An mRNA-Derived Noncoding RNA Targets and Regulates the Ribosome

Expression Profiling of a Heterogeneous Population of ncRNAs Employing a Mixed DNA/LNA Microarray

Evaluation of the Dynamic Structure of DsrA RNA from E. coli and Its Functional Consequences

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