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Domestication Shapes Recombination Patterns in Tomato

Molecular biology and evolution, 2022-01, Vol.39 (1)

2022

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The miR-200c/141-ZEB2-TGFβ axis is aberrant in human T-cell prolymphocytic leukemia

Haematologica (Roma), 2022-01, Vol.107 (1), p.143-153

2022

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Secondary Metabolism Gene Diversity and Cocultivation toward Isolation and Identification of Potent Bioactive Compounds Producing Bacterial Strains from Thailand’s Natural Resources

Scientifica (Cairo), 2022, Vol.2022, p.2827831-11

2022

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Genomic prediction in plants: opportunities for ensemble machine learning based approaches [version 1; peer review: 1 approved, 1 approved with reservations]

F1000 research, 2022, Vol.11, p.802

2022

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Evaluation of FRET X for single-molecule protein fingerprinting

iScience, 2021-11, Vol.24 (11), p.103239-103239, Article 103239

2021

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In silico assessment of a novel single-molecule protein fingerprinting method employing fragmentation and nanopore detection

iScience, 2021-10, Vol.24 (10), p.103202-103202, Article 103202

2021

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Uncovering the Role of Metabolism in Oomycete-Host Interactions Using Genome-Scale Metabolic Models

Frontiers in microbiology, 2021-10, Vol.12, p.748178

2021

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Signal-based optical map alignment

PloS one, 2021-09, Vol.16 (9), p.e0253102-e0253102

2021

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FRETboard: Semisupervised classification of FRET traces

Biophysical journal, 2021-08, Vol.120 (16), p.3253-3260

2021

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Accelerated discovery of functional genomic variation in pigs

Genomics (San Diego, Calif.), 2021-07, Vol.113 (4), p.2229-2239

2021

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The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool

BMC genomics, 2021-04, Vol.22 (1), p.265-265, Article 265

2021

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Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

PLoS computational biology, 2021-03, Vol.17 (3), p.e1008197-e1008197

2021

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Machine learning in plant science and plant breeding

iScience, 2021-01, Vol.24 (1), p.101890-101890, Article 101890

2021

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Prior Biological Knowledge Improves Genomic Prediction of Growth-Related Traits in Arabidopsis thaliana

Frontiers in genetics, 2021-01, Vol.11, p.609117

2021

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BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

Gigascience, 2021-01, Vol.10 (1)

2021

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Chasing breeding footprints through structural variations in Cucumis melo and wild relatives

G3 : genes - genomes - genetics, 2021-01, Vol.11 (1)

2021

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Geometricus represents protein structures as shape-mers derived from moment invariants

Bioinformatics, 2020-12, Vol.36 (Supplement_2), p.i718-i725

2020

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The santalene synthase from Cinnamomum camphora: Reconstruction of a sesquiterpene synthase from a monoterpene synthase

Archives of biochemistry and biophysics, 2020-11, Vol.695, p.108647-108647, Article 108647

2020

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Network Analysis Prioritizes DEWAX and ICE1 as the Candidate Genes for Major eQTL Hotspots in Seed Germination of Arabidopsis thaliana

G3 : genes - genomes - genetics, 2020-11, Vol.10 (11), p.4215-4226

2020

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Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD

PLoS genetics, 2020-09, Vol.16 (9), p.e1009027-e1009027

2020

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CAPICE: a computational method for Consequence-Agnostic Pathogenicity Interpretation of Clinical Exome variations

Genome medicine, 2020-08, Vol.12 (1), p.1-75, Article 75

2020

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Multicenter randomized clinical trial of endovascular treatment for acute ischemic stroke. The effect of periprocedural medication: acetylsalicylic acid, unfractionated heparin, both, or neither (MR CLEAN-MED). Rationale and study design

Trials, 2020-07, Vol.21 (1), p.644-644, Article 644

2020

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Hap10: reconstructing accurate and long polyploid haplotypes using linked reads

BMC bioinformatics, 2020-06, Vol.21 (1), p.253-253, Article 253

2020

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Minimum error correction-based haplotype assembly: Considerations for long read data

PloS one, 2020-06, Vol.15 (6), p.e0234470-e0234470

2020

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Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing

The Plant journal : for cell and molecular biology, 2020-05, Vol.102 (3), p.480-492

2020

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Domestication Shapes Recombination Patterns in Tomato

The miR-200c/141-ZEB2-TGFβ axis is aberrant in human T-cell prolymphocytic leukemia

Secondary Metabolism Gene Diversity and Cocultivation toward Isolation and Identification of Potent Bioactive Compounds Producing Bacterial Strains from Thailand’s Natural Resources

Genomic prediction in plants: opportunities for ensemble machine learning based approaches [version 1; peer review: 1 approved, 1 approved with reservations]

Evaluation of FRET X for single-molecule protein fingerprinting

In silico assessment of a novel single-molecule protein fingerprinting method employing fragmentation and nanopore detection

Uncovering the Role of Metabolism in Oomycete-Host Interactions Using Genome-Scale Metabolic Models

Signal-based optical map alignment

FRETboard: Semisupervised classification of FRET traces

Accelerated discovery of functional genomic variation in pigs

The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool

Integrating structure-based machine learning and co-evolution to investigate specificity in plant sesquiterpene synthases

Machine learning in plant science and plant breeding

Prior Biological Knowledge Improves Genomic Prediction of Growth-Related Traits in Arabidopsis thaliana

BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

Chasing breeding footprints through structural variations in Cucumis melo and wild relatives

Geometricus represents protein structures as shape-mers derived from moment invariants

The santalene synthase from Cinnamomum camphora: Reconstruction of a sesquiterpene synthase from a monoterpene synthase

Network Analysis Prioritizes DEWAX and ICE1 as the Candidate Genes for Major eQTL Hotspots in Seed Germination of Arabidopsis thaliana

Prioritizing sequence variants in conserved non-coding elements in the chicken genome using chCADD

CAPICE: a computational method for Consequence-Agnostic Pathogenicity Interpretation of Clinical Exome variations

Multicenter randomized clinical trial of endovascular treatment for acute ischemic stroke. The effect of periprocedural medication: acetylsalicylic acid, unfractionated heparin, both, or neither (MR CLEAN-MED). Rationale and study design

Hap10: reconstructing accurate and long polyploid haplotypes using linked reads

Minimum error correction-based haplotype assembly: Considerations for long read data

Meiotic recombination profiling of interspecific hybrid F1 tomato pollen by linked read sequencing

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