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A Two-Step Process for Epigenetic Inheritance in Arabidopsis

Molecular cell, 2014-04, Vol.54 (1), p.30-42

2014

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Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

Nature communications, 2020-10, Vol.11 (1), p.5281-5281, Article 5281

2020

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Signal Partitioning Algorithm for Highly Efficient Gaussian Mixture Modeling in Mass Spectrometry

PloS one, 2015-07, Vol.10 (7), p.e0134256-e0134256

2015

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Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome

Genes & development, 2012-08, Vol.26 (16), p.1825-1836

2012

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DeepPep: Deep proteome inference from peptide profiles

PLoS computational biology, 2017-09, Vol.13 (9), p.e1005661-e1005661

2017

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Performance Investigation of Proteomic Identification by HCD/CID Fragmentations in Combination with High/Low-Resolution Detectors on a Tribrid, High-Field Orbitrap Instrument

PloS one, 2016-07, Vol.11 (7), p.e0160160

2016

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Automated Glycan Sequencing from Tandem Mass Spectra of N‑Linked Glycopeptides

Analytical chemistry (Washington), 2016-06, Vol.88 (11), p.5725-5732

2016

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WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences

PloS one, 2016-09, Vol.11 (9), p.e0163527-e0163527

2016

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Automated annotation and quantitation of glycans by liquid chromatography/electrospray ionization mass spectrometric analysis using the MultiGlycan-ESI computational tool

Rapid communications in mass spectrometry, 2015-01, Vol.29 (1), p.135-142

2015

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Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing

PloS one, 2016-01, Vol.11 (1), p.e0147229-e0147229

2016

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MGEScan: a Galaxy-based system for identifying retrotransposons in genomes

Bioinformatics (Oxford, England), 2016-08, Vol.32 (16), p.2502-2504

2016

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The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes

mBio, 2019-07, Vol.10 (4)

2019

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Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction

PloS one, 2016-07, Vol.11 (7), p.e0160098-e0160098

2016

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Whole-genome sequencing and assembly with high-throughput, short-read technologies

PloS one, 2007-05, Vol.2 (5), p.e484-e484

2007

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The transcriptional diversity of 25 Drosophila cell lines

Genome research, 2011-02, Vol.21 (2), p.301-314

2011

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Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples

PloS one, 2016-11, Vol.11 (11), p.e0166162-e0166162

2016

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Quantitative Measurement of Phosphoproteome Response to Osmotic Stress in Arabidopsis Based on Library-Assisted eXtracted Ion Chromatogram (LAXIC)

Molecular & cellular proteomics, 2013-08, Vol.12 (8), p.2354-2369

2013

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SoftSearch: integration of multiple sequence features to identify breakpoints of structural variations

PloS one, 2013-12, Vol.8 (12), p.e83356-e83356

2013

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An Eulerian Path Approach to DNA Fragment Assembly

Proceedings of the National Academy of Sciences - PNAS, 2001-08, Vol.98 (17), p.9748-9753

2001

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Identification of potential antimicrobials against Salmonella typhimurium and Listeria monocytogenes using Quantitative Structure-Activity Relation modeling

PloS one, 2017-12, Vol.12 (12), p.e0189580

2017

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iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching

BMC medical genomics, 2020-07, Vol.13 (Suppl 7), p.98-98, Article 98

2020

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An Unsupervised kNN Method to Systematically Detect Changes in Protein Localization in High-Throughput Microscopy Images

PloS one, 2016-07, Vol.11 (7), p.e0158712-e0158712

2016

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Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry

Bioinformatics, 2013-07, Vol.29 (13), p.1706-1707

2013

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Next-generation sequencing technologies and fragment assembly algorithms

Methods in molecular biology (Clifton, N.J.), 2012, Vol.855, p.155

2012

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On the Accuracy and Limits of Peptide Fragmentation Spectrum Prediction

Analytical chemistry (Washington), 2011-02, Vol.83 (3), p.790-796

2011

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A Two-Step Process for Epigenetic Inheritance in Arabidopsis

Integration of time-series meta-omics data reveals how microbial ecosystems respond to disturbance

Signal Partitioning Algorithm for Highly Efficient Gaussian Mixture Modeling in Mass Spectrometry

Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome

DeepPep: Deep proteome inference from peptide profiles

Performance Investigation of Proteomic Identification by HCD/CID Fragmentations in Combination with High/Low-Resolution Detectors on a Tribrid, High-Field Orbitrap Instrument

Automated Glycan Sequencing from Tandem Mass Spectra of N‑Linked Glycopeptides

WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences

Automated annotation and quantitation of glycans by liquid chromatography/electrospray ionization mass spectrometric analysis using the MultiGlycan-ESI computational tool

Haplotype-Phased Synthetic Long Reads from Short-Read Sequencing

MGEScan: a Galaxy-based system for identifying retrotransposons in genomes

The Symmetrical Wave Pattern of Base-Pair Substitution Rates across the Escherichia coli Chromosome Has Multiple Causes

Ligand Similarity Complements Sequence, Physical Interaction, and Co-Expression for Gene Function Prediction

Whole-genome sequencing and assembly with high-throughput, short-read technologies

The transcriptional diversity of 25 Drosophila cell lines

Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousands of Salmonella Samples

Quantitative Measurement of Phosphoproteome Response to Osmotic Stress in Arabidopsis Based on Library-Assisted eXtracted Ion Chromatogram (LAXIC)

SoftSearch: integration of multiple sequence features to identify breakpoints of structural variations

An Eulerian Path Approach to DNA Fragment Assembly

Identification of potential antimicrobials against Salmonella typhimurium and Listeria monocytogenes using Quantitative Structure-Activity Relation modeling

iDASH secure genome analysis competition 2018: blockchain genomic data access logging, homomorphic encryption on GWAS, and DNA segment searching

An Unsupervised kNN Method to Systematically Detect Changes in Protein Localization in High-Throughput Microscopy Images

Automated annotation and quantification of glycans using liquid chromatography-mass spectrometry

Next-generation sequencing technologies and fragment assembly algorithms

On the Accuracy and Limits of Peptide Fragmentation Spectrum Prediction

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