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The Varkud Satellite Ribozyme: A Thirty-Year Journey through Biochemistry, Crystallography, and Computation

Accounts of chemical research, 2021-06, Vol.54 (11), p.2591-2602

2021

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Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme

Proceedings of the National Academy of Sciences - PNAS, 2010-06, Vol.107 (26), p.11751-11756

2010

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Synthetic antibodies for specific recognition and crystallization of structured RNA

Proceedings of the National Academy of Sciences - PNAS, 2008-01, Vol.105 (1), p.82-87

2008

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Arginine as a General Acid Catalyst in Serine Recombinase-mediated DNA Cleavage

The Journal of biological chemistry, 2013-10, Vol.288 (40), p.29206-29214

2013

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The SARS-CoV‑2 Programmed −1 Ribosomal Frameshifting Element Crystal Structure Solved to 2.09 Å Using Chaperone-Assisted RNA Crystallography

ACS chemical biology, 2021-08, Vol.16 (8), p.1469-1481

2021

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Isoform-specific monobody inhibitors of small ubiquitin-related modifiers engineered using structure-guided library design

Proceedings of the National Academy of Sciences - PNAS, 2011-05, Vol.108 (19), p.7751-7756

2011

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Separation of RNA Phosphorothioate Oligonucleotides by HPLC

Methods in Enzymology, 2009, Vol.468, p.289-309

2009

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Automated Solid-Phase Synthesis of RNA Oligonucleotides Containing a Nonbridging Phosphorodithioate Linkage via Phosphorothioamidites

Journal of organic chemistry, 2012-11, Vol.77 (21), p.9889-9892

2012

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A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore

Nature chemical biology, 2014-08, Vol.10 (8), p.686-691

2014

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Hachimoji DNA and RNA: A genetic system with eight building blocks

Science (American Association for the Advancement of Science), 2019-02, Vol.363 (6429), p.884-887

2019

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RNA catalyses nuclear pre-mRNA splicing

Nature (London), 2013-11, Vol.503 (7475), p.229-234

2013

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The L-platform/L-scaffold framework: a blueprint for RNA-cleaving nucleic acid enzyme design

RNA (Cambridge), 2020-02, Vol.26 (2), p.111-125

2020

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Kinetic Isotope Effects for RNA Cleavage by 2′-O- Transphosphorylation: Nucleophilic Activation by Specific Base

Journal of the American Chemical Society, 2010-08, Vol.132 (33), p.11613-11621

2010

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An active site rearrangement within the Tetrahymena group I ribozyme releases nonproductive interactions and allows formation of catalytic interactions

RNA (Cambridge), 2016-01, Vol.22 (1), p.32-48

2016

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Structural inference of native and partially folded RNA by high-throughput contact mapping

Proceedings of the National Academy of Sciences - PNAS, 2008-03, Vol.105 (11), p.4144-4149

2008

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Three Metal Ions at the Active Site of the Tetrahymena Group I Ribozyme

Proceedings of the National Academy of Sciences - PNAS, 1999-10, Vol.96 (22), p.12299-12304

1999

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The electrostatic character of the ribosomal surface enables extraordinarily rapid target location by ribotoxins

Nature structural & molecular biology, 2006-05, Vol.13 (5), p.436-443

2006

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Spinach RNA aptamer detects lead(II) with high selectivity

Chemical communications (Cambridge, England), 2015-05, Vol.51 (43), p.9034-9037

2015

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High-Speed All-Optical Generation of Advanced Modulation Formats Using Photonic-Integrated All-Optical Format Converter

IEEE journal of selected topics in quantum electronics, 2012-03, Vol.18 (2), p.765-771

2012

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Defining the Catalytic Metal Ion Interactions in the Tetrahymena Ribozyme Reaction

Biochemistry (Easton), 2001-05, Vol.40 (17), p.5161-5171

2001

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Study of all-optical XOR using Mach-Zehnder Interferometer and differential scheme

IEEE journal of quantum electronics, 2004-06, Vol.40 (6), p.703-710

2004

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Synthetic Antibody Binding to a Preorganized RNA Domain of Hepatitis C Virus Internal Ribosome Entry Site Inhibits Translation

ACS chemical biology, 2020-01, Vol.15 (1), p.205-216

2020

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Evidence for a Catalytic Strategy to Promote Nucleophile Activation in Metal-Dependent RNA-Cleaving Ribozymes and 8‑17 DNAzyme

ACS catalysis, 2019-12, Vol.9 (12), p.10612-10617

2019

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Rapid Kinetics of Pistol Ribozyme: Insights into Limits to RNA Catalysis

Biochemistry (Easton), 2023-07, Vol.62 (13), p.2079-2092

2023

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Laboratory evolution of artificially expanded DNA gives redesignable aptamers that target the toxic form of anthrax protective antigen

Nucleic acids research, 2016-11, Vol.44 (20), p.9565

2016

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The Varkud Satellite Ribozyme: A Thirty-Year Journey through Biochemistry, Crystallography, and Computation

Nucleobase-mediated general acid-base catalysis in the Varkud satellite ribozyme

Synthetic antibodies for specific recognition and crystallization of structured RNA

Arginine as a General Acid Catalyst in Serine Recombinase-mediated DNA Cleavage

The SARS-CoV‑2 Programmed −1 Ribosomal Frameshifting Element Crystal Structure Solved to 2.09 Å Using Chaperone-Assisted RNA Crystallography

Isoform-specific monobody inhibitors of small ubiquitin-related modifiers engineered using structure-guided library design

Separation of RNA Phosphorothioate Oligonucleotides by HPLC

Automated Solid-Phase Synthesis of RNA Oligonucleotides Containing a Nonbridging Phosphorodithioate Linkage via Phosphorothioamidites

A G-quadruplex-containing RNA activates fluorescence in a GFP-like fluorophore

Hachimoji DNA and RNA: A genetic system with eight building blocks

RNA catalyses nuclear pre-mRNA splicing

The L-platform/L-scaffold framework: a blueprint for RNA-cleaving nucleic acid enzyme design

Kinetic Isotope Effects for RNA Cleavage by 2′-O- Transphosphorylation: Nucleophilic Activation by Specific Base

An active site rearrangement within the Tetrahymena group I ribozyme releases nonproductive interactions and allows formation of catalytic interactions

Structural inference of native and partially folded RNA by high-throughput contact mapping

Three Metal Ions at the Active Site of the Tetrahymena Group I Ribozyme

The electrostatic character of the ribosomal surface enables extraordinarily rapid target location by ribotoxins

Spinach RNA aptamer detects lead(II) with high selectivity

High-Speed All-Optical Generation of Advanced Modulation Formats Using Photonic-Integrated All-Optical Format Converter

Defining the Catalytic Metal Ion Interactions in the Tetrahymena Ribozyme Reaction

Study of all-optical XOR using Mach-Zehnder Interferometer and differential scheme

Synthetic Antibody Binding to a Preorganized RNA Domain of Hepatitis C Virus Internal Ribosome Entry Site Inhibits Translation

Evidence for a Catalytic Strategy to Promote Nucleophile Activation in Metal-Dependent RNA-Cleaving Ribozymes and 8‑17 DNAzyme

Rapid Kinetics of Pistol Ribozyme: Insights into Limits to RNA Catalysis

Laboratory evolution of artificially expanded DNA gives redesignable aptamers that target the toxic form of anthrax protective antigen

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