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How Big Data and High-performance Computing Drive Brain Science

Genomics, proteomics & bioinformatics, 2019-08, Vol.17 (4), p.381-392

2019

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ACMViz: a visual analytics approach to understand DRL-based autonomous control model

Journal of visualization, 2022-04, Vol.25 (2), p.427-442

2022

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Single-cell RNA sequencing reveals intratumoral heterogeneity and potential mechanisms of malignant progression in prostate cancer with perineural invasion

Frontiers in genetics, 2023-01, Vol.13, p.1073232-1073232

2023

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DIVIS: Integrated and Customizable Pipeline for Cancer Genome Sequencing Analysis and Interpretation

Frontiers in oncology, 2021-06, Vol.11, p.672597-672597

2021

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GenomeVIP: a cloud platform for genomic variant discovery and interpretation

Genome research, 2017-08, Vol.27 (8), p.1450-1459

2017

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Gclust: A Parallel Clustering Tool for Microbial Genomic Data

Genomics, proteomics & bioinformatics, 2019-10, Vol.17 (5), p.496-502

2019

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ATG7 Promotes Bladder Cancer Invasion via Autophagy‐Mediated Increased ARHGDIB mRNA Stability

Advanced science, 2021-11, Vol.8 (22), p.e2104365-n/a

2021

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Peridynamic modeling for multiscale heat transport of phonon Boltzmann transport equation

Computer physics communications, 2024-06, Vol.299, p.109157, Article 109157

2024

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HotSpot3D web server: an integrated resource for mutation analysis in protein 3D structures

Bioinformatics, 2020-06, Vol.36 (12), p.3944-3946

2020

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Pan-cancer analysis of whole genomes

Nature (London), 2020-02, Vol.578 (7793), p.82-93

2020

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Ultrafast clustering algorithms for metagenomic sequence analysis

Briefings in bioinformatics, 2012-11, Vol.13 (6), p.656-668

2012

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Unveiling the metal mutation nexus: Exploring the genomic impacts of heavy metal exposure in lung adenocarcinoma and colorectal cancer

Journal of hazardous materials, 2024-01, Vol.461, p.132590-132590, Article 132590

2024

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The landscape of viral associations in human cancers

Nature genetics, 2020-03, Vol.52 (3), p.320-330

2020

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Comprehensive molecular characterization of mitochondrial genomes in human cancers

Nature genetics, 2020-03, Vol.52 (3), p.342-352

2020

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MetaSpark: a spark-based distributed processing tool to recruit metagenomic reads to reference genomes

Bioinformatics (Oxford, England), 2017-04, Vol.33 (7), p.1090-1092

2017

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Complete and durable response to crizotinib in a patient with malignant pleural mesothelioma harboring CD74-ROS1 fusion

Journal of cancer research and clinical oncology, 2022-09, Vol.148 (9), p.2561-2566

2022

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RabbitQC: high-speed scalable quality control for sequencing data

Bioinformatics, 2021-05, Vol.37 (4), p.573-574

2021

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Long-term response to camrelizumab in a pretreated metastatic mixed testicular germ-cell tumor patient with co-mutations in DNA damage-repair genes

Immunotherapy, 2023-01, Vol.15 (1), p.17-25

2023

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Comparative genomic and transcriptomic analyses uncover the molecular basis of high nitrogen-use efficiency in the wheat cultivar Kenong 9204

Molecular plant, 2022-09, Vol.15 (9), p.1440-1456

2022

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Identification of MKI67, TPR and TCHH Mutations as Prognostic Biomarkers for Patients with Defective Mismatch Repair Colon Cancer Stage II/III

Diseases of the colon & rectum, 2023-11

2023

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Revealing prognostic insights of programmed cell death (PCD)-associated genes in advanced non-small cell lung cancer

Aging (Albany, NY.), 2024-05, Vol.16 (9), p.8110-8141

2024

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Review of deep learning-based pathological image classification: From task-specific models to foundation models

Future generation computer systems, 2024-10, p.107578, Article 107578

2024

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RabbitQCPlus 2.0: More efficient and versatile quality control for sequencing data

Methods (San Diego, Calif.), 2023-08, Vol.216, p.39-50

2023

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Divergent mutational processes distinguish hypoxic and normoxic tumours

Nature communications, 2020-02, Vol.11 (1), p.737-10, Article 737

2020

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Comprehensive fundamental somatic variant calling and quality management strategies for human cancer genomes

Briefings in bioinformatics, 2021-05, Vol.22 (3)

2021

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How Big Data and High-performance Computing Drive Brain Science

ACMViz: a visual analytics approach to understand DRL-based autonomous control model

Single-cell RNA sequencing reveals intratumoral heterogeneity and potential mechanisms of malignant progression in prostate cancer with perineural invasion

DIVIS: Integrated and Customizable Pipeline for Cancer Genome Sequencing Analysis and Interpretation

GenomeVIP: a cloud platform for genomic variant discovery and interpretation

Gclust: A Parallel Clustering Tool for Microbial Genomic Data

ATG7 Promotes Bladder Cancer Invasion via Autophagy‐Mediated Increased ARHGDIB mRNA Stability

Peridynamic modeling for multiscale heat transport of phonon Boltzmann transport equation

HotSpot3D web server: an integrated resource for mutation analysis in protein 3D structures

Pan-cancer analysis of whole genomes

Ultrafast clustering algorithms for metagenomic sequence analysis

Unveiling the metal mutation nexus: Exploring the genomic impacts of heavy metal exposure in lung adenocarcinoma and colorectal cancer

The landscape of viral associations in human cancers

Comprehensive molecular characterization of mitochondrial genomes in human cancers

MetaSpark: a spark-based distributed processing tool to recruit metagenomic reads to reference genomes

Complete and durable response to crizotinib in a patient with malignant pleural mesothelioma harboring CD74-ROS1 fusion

RabbitQC: high-speed scalable quality control for sequencing data

Long-term response to camrelizumab in a pretreated metastatic mixed testicular germ-cell tumor patient with co-mutations in DNA damage-repair genes

Comparative genomic and transcriptomic analyses uncover the molecular basis of high nitrogen-use efficiency in the wheat cultivar Kenong 9204

Identification of MKI67, TPR and TCHH Mutations as Prognostic Biomarkers for Patients with Defective Mismatch Repair Colon Cancer Stage II/III

Revealing prognostic insights of programmed cell death (PCD)-associated genes in advanced non-small cell lung cancer

Review of deep learning-based pathological image classification: From task-specific models to foundation models

RabbitQCPlus 2.0: More efficient and versatile quality control for sequencing data

Divergent mutational processes distinguish hypoxic and normoxic tumours

Comprehensive fundamental somatic variant calling and quality management strategies for human cancer genomes

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