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Adaptation of Fusarium Head Blight Pathogens to Changes in Agricultural Practices and Human Migration

Advanced science, 2024-09, Vol.11 (36), p.e2401899-n/a

2024

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Nanopores Reveal the Stoichiometry of Single Oligoadenylates Produced by Type III CRISPR-Cas

ACS nano, 2024-07, Vol.18 (26), p.16505-16515

2024

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Full-length single-molecule protein fingerprinting

Nature nanotechnology, 2024-05, Vol.19 (5), p.652-659

2024

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The use of proton transfer reaction mass spectrometry for high throughput screening of terpene synthases

Journal of mass spectrometry., 2023-06, Vol.58 (6), p.e4951-n/a

2023

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PanTools v3: functional annotation, classification and phylogenomics

Bioinformatics, 2022-09, Vol.38 (18), p.4403-4405

2022

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Editorial: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics

Frontiers in artificial intelligence, 2022-06, Vol.5, p.959470-959470

2022

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Geometricus represents protein structures as shape-mers derived from moment invariants

Bioinformatics, 2020-12, Vol.36 (Supplement_2), p.i718-i725

2020

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GeneNoteBook, a collaborative notebook for comparative genomics

Bioinformatics, 2019-11, Vol.35 (22), p.4779-4781

2019

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poreTally: run and publish de novo nanopore assembler benchmarks

Bioinformatics, 2019-08, Vol.35 (15), p.2663-2664

2019

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Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis

Bioinformatics (Oxford, England), 2019-06, Vol.35 (12), p.2036-2042

2019

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TriPoly: haplotype estimation for polyploids using sequencing data of related individuals

Bioinformatics, 2018-11, Vol.34 (22), p.3864-3872

2018

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Classification, Parameter Estimation and State Estimation: An Engineering Approach Using MATLAB

Bangjun Lei, Guangzhu Xu, Ming Feng, Yaobin Zou, Ferdinand van der Heijden, Dick de Ridder, David M. J. Tax

Second edition., 2017

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PanTools: representation, storage and exploration of pan-genomic data

Bioinformatics (Oxford, England), 2016-09, Vol.32 (17), p.i487-i493

2016

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ACE: accurate correction of errors using K-mer tries

Bioinformatics, 2015-10, Vol.31 (19), p.3216-3218

2015

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Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold

Bioinformatics, 2013-11, Vol.29 (22), p.2826-2834

2013

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De novo detection of copy number variation by co-assembly

Bioinformatics, 2012-12, Vol.28 (24), p.3195-3202

2012

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GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies

Bioinformatics (Oxford, England), 2012-06, Vol.28 (11), p.1429-1437

2012

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Flux Measurement Selection in Metabolic Networks

Pattern Recognition in Bioinformatics, 2011, p.214-224

2011

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Using Kendall-τ Meta-Bagging to Improve Protein-Protein Docking Predictions

Pattern Recognition in Bioinformatics, 2011, p.284-295

2011

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A Two-Way Bayesian Mixture Model for Clustering in Metagenomics

Pattern Recognition in Bioinformatics, 2011, p.25-36

2011

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Epithelial Area Detection in Cytokeratin Microscopic Images Using MSER Segmentation in an Anisotropic Pyramid

Pattern Recognition in Bioinformatics, 2011, p.318-329

2011

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Biclustering of Expression Microarray Data Using Affinity Propagation

Pattern Recognition in Bioinformatics, 2011, p.13-24

2011

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Renal Cancer Cell Classification Using Generative Embeddings and Information Theoretic Kernels

Pattern Recognition in Bioinformatics, 2011, p.75-86

2011

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Multi-task Drug Bioactivity Classification with Graph Labeling Ensembles

Pattern Recognition in Bioinformatics, 2011, p.157-167

2011

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Predicting Metabolic Fluxes Using Gene Expression Differences As Constraints

IEEE/ACM transactions on computational biology and bioinformatics, 2011-01, Vol.8 (1), p.206-216

2011

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Adaptation of Fusarium Head Blight Pathogens to Changes in Agricultural Practices and Human Migration

Nanopores Reveal the Stoichiometry of Single Oligoadenylates Produced by Type III CRISPR-Cas

Full-length single-molecule protein fingerprinting

The use of proton transfer reaction mass spectrometry for high throughput screening of terpene synthases

PanTools v3: functional annotation, classification and phylogenomics

Editorial: Artificial Intelligence and Machine Learning Applications in Plant Genomics and Genetics

Geometricus represents protein structures as shape-mers derived from moment invariants

GeneNoteBook, a collaborative notebook for comparative genomics

poreTally: run and publish de novo nanopore assembler benchmarks

Improved inference of intermolecular contacts through protein-protein interaction prediction using coevolutionary analysis

TriPoly: haplotype estimation for polyploids using sequencing data of related individuals

Classification, Parameter Estimation and State Estimation: An Engineering Approach Using MATLAB

PanTools: representation, storage and exploration of pan-genomic data

ACE: accurate correction of errors using K-mer tries

Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold

De novo detection of copy number variation by co-assembly

GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies

Flux Measurement Selection in Metabolic Networks

Using Kendall-τ Meta-Bagging to Improve Protein-Protein Docking Predictions

A Two-Way Bayesian Mixture Model for Clustering in Metagenomics

Epithelial Area Detection in Cytokeratin Microscopic Images Using MSER Segmentation in an Anisotropic Pyramid

Biclustering of Expression Microarray Data Using Affinity Propagation

Renal Cancer Cell Classification Using Generative Embeddings and Information Theoretic Kernels

Multi-task Drug Bioactivity Classification with Graph Labeling Ensembles

Predicting Metabolic Fluxes Using Gene Expression Differences As Constraints

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