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Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

Nature (London), 2014-01, Vol.505 (7485), p.701-705

2014

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Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells

Nature communications, 2022-03, Vol.13 (1), p.1128-14, Article 1128

2022

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Operon mRNAs are organized into ORF-centric structures that predict translation efficiency

eLife, 2017-01, Vol.6

2017

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Determination of RNA structural diversity and its role in HIV-1 RNA splicing

Nature (London), 2020-06, Vol.582 (7812), p.438-442

2020

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Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation

Molecular systems biology, 2014-12, Vol.10 (12), p.770-n/a

2014

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A Ribosome-Bound Quality Control Complex Triggers Degradation of Nascent Peptides and Signals Translation Stress

Cell, 2012-11, Vol.151 (5), p.1042-1054

2012

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3D RNA-scaffolded wireframe origami

Nature communications, 2023-01, Vol.14 (1), p.382-14, Article 382

2023

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An intranasal ASO therapeutic targeting SARS-CoV-2

Nature communications, 2022-08, Vol.13 (1), p.4503-13, Article 4503

2022

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Viral RNA structure analysis using DMS-MaPseq

Methods (San Diego, Calif.), 2020-11, Vol.183, p.68-75

2020

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DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo

Nature methods, 2017-01, Vol.14 (1), p.75-82

2017

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Microarray Detection of Human Parainfluenzavirus 4 Infection Associated with Respiratory Failure in an Immunocompetent Adult

Clinical infectious diseases, 2006-10, Vol.43 (8), p.e71-e76

2006

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Untangling the pseudoknots of SARS-CoV-2: Insights into structural heterogeneity and plasticity

Current opinion in structural biology, 2024-10, Vol.88, p.102912, Article 102912

2024

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RNA levers and switches controlling viral gene expression

Trends in biochemical sciences (Amsterdam. Regular ed.), 2023-04, Vol.48 (4), p.391-406

2023

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Diagnosis of a Critical Respiratory Illness Caused by Human Metapneumovirus by Use of a Pan-Virus Microarray

Journal of Clinical Microbiology, 2007-07, Vol.45 (7), p.2340-2343

2007

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Utility of DNA Microarrays for Detection of Viruses in Acute Respiratory Tract Infections in Children

The Journal of pediatrics, 2008-07, Vol.153 (1), p.76-83.e1

2008

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A Stress Response that Monitors and Regulates mRNA Structure Is Central to Cold Shock Adaptation

Molecular cell, 2018-04, Vol.70 (2), p.274-286.e7

2018

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Structure of pre-miR-31 reveals an active role in Dicer–TRBP complex processing

Proceedings of the National Academy of Sciences - PNAS, 2023-09, Vol.120 (39), p.e2300527120-e2300527120

2023

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Genome-wide diversity and selective pressure in the human rhinovirus

Virology journal, 2007-05, Vol.4 (1), p.40-40

2007

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Web-based platform for analysis of RNA folding from high throughput chemical probing data

Nucleic acids research, 2022-07, Vol.50 (W1), p.W266-W271

2022

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HnRNP A1/A2 Proteins Assemble onto 7SK snRNA via Context Dependent Interactions

Journal of molecular biology, 2021-04, Vol.433 (9), p.166885-166885, Article 166885

2021

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Trypanosome RNA helicase KREH2 differentially controls non-canonical editing and putative repressive structure via a novel proposed 'bifunctional' gRNA in mRNA A6

Nucleic acids research, 2023-07, Vol.51 (13), p.6944-6965

2023

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Recurrent emergence of Klebsiella pneumoniae carbapenem resistance mediated by an inhibitory ompK36 mRNA secondary structure

Proceedings of the National Academy of Sciences - PNAS, 2022-09, Vol.119 (38), p.1-e2203593119

2022

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Pan-Viral Screening of Respiratory Tract Infections in Adults With and Without Asthma Reveals Unexpected Human Coronavirus and Human Rhinovirus Diversity

The Journal of infectious diseases, 2007-09, Vol.196 (6), p.817-825

2007

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Differential translation of mRNA isoforms transcribed with distinct sigma factors

RNA (Cambridge), 2021-07, Vol.27 (7), p.791-804

2021

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Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells

Operon mRNAs are organized into ORF-centric structures that predict translation efficiency

Determination of RNA structural diversity and its role in HIV-1 RNA splicing

Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation

A Ribosome-Bound Quality Control Complex Triggers Degradation of Nascent Peptides and Signals Translation Stress

3D RNA-scaffolded wireframe origami

An intranasal ASO therapeutic targeting SARS-CoV-2

Viral RNA structure analysis using DMS-MaPseq

DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo

Microarray Detection of Human Parainfluenzavirus 4 Infection Associated with Respiratory Failure in an Immunocompetent Adult

Untangling the pseudoknots of SARS-CoV-2: Insights into structural heterogeneity and plasticity

RNA levers and switches controlling viral gene expression

Diagnosis of a Critical Respiratory Illness Caused by Human Metapneumovirus by Use of a Pan-Virus Microarray

Utility of DNA Microarrays for Detection of Viruses in Acute Respiratory Tract Infections in Children

A Stress Response that Monitors and Regulates mRNA Structure Is Central to Cold Shock Adaptation

Structure of pre-miR-31 reveals an active role in Dicer–TRBP complex processing

Genome-wide diversity and selective pressure in the human rhinovirus

Web-based platform for analysis of RNA folding from high throughput chemical probing data

HnRNP A1/A2 Proteins Assemble onto 7SK snRNA via Context Dependent Interactions

Trypanosome RNA helicase KREH2 differentially controls non-canonical editing and putative repressive structure via a novel proposed 'bifunctional' gRNA in mRNA A6

KREH2 helicase represses ND7 mRNA editing in procyclic-stage Trypanosoma brucei by opposite modulation of canonical and ‘moonlighting’ gRNA utilization creating a proposed mRNA structure

Recurrent emergence of Klebsiella pneumoniae carbapenem resistance mediated by an inhibitory ompK36 mRNA secondary structure

Pan-Viral Screening of Respiratory Tract Infections in Adults With and Without Asthma Reveals Unexpected Human Coronavirus and Human Rhinovirus Diversity

Differential translation of mRNA isoforms transcribed with distinct sigma factors

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