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Advances and prospects in metabolic engineering of Zymomonas mobilis

Metabolic engineering, 2018-11, Vol.50, p.57-73

2018

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RNA oxidation in chromatin modification and DNA-damage response following exposure to formaldehyde

Scientific reports, 2020-10, Vol.10 (1), p.16545-16, Article 16545

2020

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A strategy to quantify myofibroblast activation on a continuous spectrum

Scientific reports, 2022-07, Vol.12 (1), p.12239-13, Article 12239

2022

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High-throughput in vivo mapping of RNA accessible interfaces to identify functional sRNA binding sites

Nature communications, 2018-10, Vol.9 (1), p.4084-16, Article 4084

2018

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A small RNA regulates pprM, a modulator of pleiotropic proteins promoting DNA repair, in Deinococcus radiodurans under ionizing radiation

Scientific reports, 2021-06, Vol.11 (1), p.12949-14, Article 12949

2021

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PNPase and RhlB Interact and Reduce the Cellular Availability of Oxidized RNA in Deinococcus radiodurans

Microbiology spectrum, 2022-08, Vol.10 (4), p.e0214022

2022

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Characterization of epitranscriptome reader proteins experimentally and in silico: Current knowledge and future perspectives beyond the YTH domain

Computational and structural biotechnology journal, 2023-01, Vol.21, p.3541-3556

2023

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Signal Recognition Particle RNA Contributes to Oxidative Stress Response in Deinococcus radiodurans by Modulating Catalase Localization

Frontiers in microbiology, 2020-12, Vol.11, p.613571-613571

2020

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Functional implications of ribosomal RNA methylation in response to environmental stress

Critical reviews in biochemistry and molecular biology, 2014-01, Vol.49 (1), p.69-89

2014

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Optimizing metabolite production using periodic oscillations

PLoS computational biology, 2014-06, Vol.10 (6), p.e1003658-e1003658

2014

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Defective Ribonucleoproteins, Mistakes in RNA Processing, and Diseases

Biochemistry (Easton), 2017-03, Vol.56 (10), p.1367-1382

2017

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Small RNAs in mycobacteria: an unfolding story

Frontiers in cellular and infection microbiology, 2014, Vol.4, p.96

2014

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Identification and Characterization of 5' Untranslated Regions (5'UTRs) in Zymomonas mobilis as Regulatory Biological Parts

Frontiers in microbiology, 2017-12, Vol.8, p.2432-2432

2017

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Applying a New REFINE Approach in Zymomonas mobilis Identifies Novel sRNAs That Confer Improved Stress Tolerance Phenotypes

Frontiers in microbiology, 2020-01, Vol.10, p.2987-2987

2020

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Identification of novel sRNAs in mycobacterial species

PloS one, 2013-11, Vol.8 (11), p.e79411-e79411

2013

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Exploiting post-transcriptional regulation to probe RNA structures in vivo via fluorescence

Nucleic acids research, 2015-01, Vol.43 (2), p.e13-e13

2015

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The Post-Transcriptional Regulatory Protein CsrA Amplifies Its Targetome through Direct Interactions with Stress-Response Regulatory Hubs: The EvgA and AcnA Cases

Microorganisms (Basel), 2024-04, Vol.12 (4), p.636

2024

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CsrA selectively modulates sRNA-mRNA regulator outcomes

Frontiers in molecular biosciences, 2023-11, Vol.10, p.1249528-1249528

2023

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Uncovering Transcriptional Regulators and Targets of sRNAs Using an Integrative Data-Mining Approach: H-NS-Regulated RseX as a Case Study

Frontiers in cellular and infection microbiology, 2021-07, Vol.11, p.696533-696533

2021

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Rational Modular RNA Engineering Based on In Vivo Profiling of Structural Accessibility

ACS synthetic biology, 2017-12, Vol.6 (12), p.2228-2240

2017

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Methods and advances in RNA characterization and design

Methods (San Diego, Calif.), 2018-07, Vol.143, p.1-3

Contreras, Lydia M.

2018

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Regulatory non-coding sRNAs in bacterial metabolic pathway engineering

Metabolic engineering, 2019-03, Vol.52, p.190-214

2019

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RNA-binding proteins that preferentially interact with 8-oxoG-modified RNAs: our current understanding

Biochemical Society transactions, 2024-02, Vol.52 (1), p.111-122

2024

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Computational evolution of an RNA-binding protein towards enhanced oxidized-RNA binding

Computational and structural biotechnology journal, 2020-01, Vol.18, p.137-152

2020

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Engineering Toehold-Mediated Switches for Native RNA Detection and Regulation in Bacteria

Journal of molecular biology, 2022-09, Vol.434 (18), p.167689-167689, Article 167689

2022

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Advances and prospects in metabolic engineering of Zymomonas mobilis

RNA oxidation in chromatin modification and DNA-damage response following exposure to formaldehyde

A strategy to quantify myofibroblast activation on a continuous spectrum

High-throughput in vivo mapping of RNA accessible interfaces to identify functional sRNA binding sites

A small RNA regulates pprM, a modulator of pleiotropic proteins promoting DNA repair, in Deinococcus radiodurans under ionizing radiation

PNPase and RhlB Interact and Reduce the Cellular Availability of Oxidized RNA in Deinococcus radiodurans

Characterization of epitranscriptome reader proteins experimentally and in silico: Current knowledge and future perspectives beyond the YTH domain

Signal Recognition Particle RNA Contributes to Oxidative Stress Response in Deinococcus radiodurans by Modulating Catalase Localization

Functional implications of ribosomal RNA methylation in response to environmental stress

Optimizing metabolite production using periodic oscillations

Defective Ribonucleoproteins, Mistakes in RNA Processing, and Diseases

Small RNAs in mycobacteria: an unfolding story

Identification and Characterization of 5' Untranslated Regions (5'UTRs) in Zymomonas mobilis as Regulatory Biological Parts

Applying a New REFINE Approach in Zymomonas mobilis Identifies Novel sRNAs That Confer Improved Stress Tolerance Phenotypes

Identification of novel sRNAs in mycobacterial species

Exploiting post-transcriptional regulation to probe RNA structures in vivo via fluorescence

The Post-Transcriptional Regulatory Protein CsrA Amplifies Its Targetome through Direct Interactions with Stress-Response Regulatory Hubs: The EvgA and AcnA Cases

CsrA selectively modulates sRNA-mRNA regulator outcomes

Uncovering Transcriptional Regulators and Targets of sRNAs Using an Integrative Data-Mining Approach: H-NS-Regulated RseX as a Case Study

Rational Modular RNA Engineering Based on In Vivo Profiling of Structural Accessibility

Methods and advances in RNA characterization and design

Regulatory non-coding sRNAs in bacterial metabolic pathway engineering

RNA-binding proteins that preferentially interact with 8-oxoG-modified RNAs: our current understanding

Computational evolution of an RNA-binding protein towards enhanced oxidized-RNA binding

Engineering Toehold-Mediated Switches for Native RNA Detection and Regulation in Bacteria

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