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Leveraging multiple data types to estimate the size of the Zika epidemic in the Americas

PLoS neglected tropical diseases, 2020-09, Vol.14 (9), p.e0008640-e0008640

2020

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Temperature modulates dengue virus epidemic growth rates through its effects on reproduction numbers and generation intervals

PLoS neglected tropical diseases, 2017-07, Vol.11 (7), p.e0005797

2017

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Downgrading disease transmission risk estimates using terminal importations

PLoS neglected tropical diseases, 2019-06, Vol.13 (6), p.e0007395

2019

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Fusing an agent-based model of mosquito population dynamics with a statistical reconstruction of spatio-temporal abundance patterns

PLoS computational biology, 2023-04, Vol.19 (4), p.e1010424-e1010424

2023

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An agent-based model of dengue virus transmission shows how uncertainty about breakthrough infections influences vaccination impact projections

PLoS computational biology, 2019-03, Vol.15 (3), p.e1006710

2019

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Estimating the impact of city-wide Aedes aegypti population control: An observational study in Iquitos, Peru

PLoS neglected tropical diseases, 2019-05, Vol.13 (5), p.e0007255

2019

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Inferences about spatiotemporal variation in dengue virus transmission are sensitive to assumptions about human mobility: a case study using geolocated tweets from Lahore, Pakistan

EPJ data science, 2018-06, Vol.7 (1), p.16-16, Article 16

2018

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Retracing Zika’s footsteps across the Americas with computational modeling

Proceedings of the National Academy of Sciences - PNAS, 2017-05, Vol.114 (22), p.5558-5560

Perkins, T. Alex

2017

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An ensemble n-sub-epidemic modeling framework for short-term forecasting epidemic trajectories: Application to the COVID-19 pandemic in the USA

PLoS computational biology, 2022-10, Vol.18 (10), p.e1010602-e1010602

2022

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Omitting age-dependent mosquito mortality in malaria models underestimates the effectiveness of insecticide-treated nets

PLoS computational biology, 2022-09, Vol.18 (9), p.e1009540-e1009540

2022

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Comparing and linking machine learning and semi-mechanistic models for the predictability of endemic measles dynamics

PLoS computational biology, 2022-09, Vol.18 (9), p.e1010251

2022

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Bayesian back-calculation and nowcasting for line list data during the COVID-19 pandemic

PLoS computational biology, 2021-07, Vol.17 (7), p.e1009210-e1009210

2021

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An approximate diffusion process for environmental stochasticity in infectious disease transmission modelling

PLoS computational biology, 2023-05, Vol.19 (5), p.e1011088-e1011088

2023

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Using Hawkes Processes to model imported and local malaria cases in near-elimination settings

PLoS computational biology, 2021-04, Vol.17 (4), p.e1008830

2021

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Addressing delayed case reporting in infectious disease forecast modeling

PLoS computational biology, 2022-06, Vol.18 (6), p.e1010115-e1010115

2022

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Trip duration drives shift in travel network structure with implications for the predictability of spatial disease spread

PLoS computational biology, 2021-08, Vol.17 (8), p.e1009127

2021

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Modeling the effects of Aedes aegypti's larval environment on adult body mass at emergence

PLoS computational biology, 2021-11, Vol.17 (11), p.e1009102-e1009102

2021

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Pooled testing of traced contacts under superspreading dynamics

PLoS computational biology, 2022-03, Vol.18 (3), p.e1010008

2022

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Accurate influenza forecasts using type-specific incidence data for small geographic units

PLoS computational biology, 2021-07, Vol.17 (7), p.e1009230-e1009230

2021

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Time varying methods to infer extremes in dengue transmission dynamics

PLoS computational biology, 2020-10, Vol.16 (10), p.e1008279

2020

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Marine heatwaves threaten global biodiversity and the provision of ecosystem services

Nature climate change, 2019-04, Vol.9 (4), p.306-312

2019

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A hierarchical approach to defining marine heatwaves

Progress in oceanography, 2016-02, Vol.141, p.227-238

2016

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Focus on poleward shifts in species' distribution underestimates the fingerprint of climate change

Nature climate change, 2013-03, Vol.3 (3), p.239-243

2013

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Intrinsic Transparent Conductors without Doping

Physical review letters, 2015-10, Vol.115 (17), p.176602-176602, Article 176602

2015

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Li-Doped Cr2MnO4: A New p-Type Transparent Conducting Oxide by Computational Materials Design

Advanced functional materials, 2013-11, Vol.23 (42), p.5267-5276

2013

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Leveraging multiple data types to estimate the size of the Zika epidemic in the Americas

Temperature modulates dengue virus epidemic growth rates through its effects on reproduction numbers and generation intervals

Downgrading disease transmission risk estimates using terminal importations

Fusing an agent-based model of mosquito population dynamics with a statistical reconstruction of spatio-temporal abundance patterns

An agent-based model of dengue virus transmission shows how uncertainty about breakthrough infections influences vaccination impact projections

Estimating the impact of city-wide Aedes aegypti population control: An observational study in Iquitos, Peru

Inferences about spatiotemporal variation in dengue virus transmission are sensitive to assumptions about human mobility: a case study using geolocated tweets from Lahore, Pakistan

Retracing Zika’s footsteps across the Americas with computational modeling

An ensemble n-sub-epidemic modeling framework for short-term forecasting epidemic trajectories: Application to the COVID-19 pandemic in the USA

Omitting age-dependent mosquito mortality in malaria models underestimates the effectiveness of insecticide-treated nets

Comparing and linking machine learning and semi-mechanistic models for the predictability of endemic measles dynamics

Bayesian back-calculation and nowcasting for line list data during the COVID-19 pandemic

An approximate diffusion process for environmental stochasticity in infectious disease transmission modelling

Using Hawkes Processes to model imported and local malaria cases in near-elimination settings

Addressing delayed case reporting in infectious disease forecast modeling

Trip duration drives shift in travel network structure with implications for the predictability of spatial disease spread

Modeling the effects of Aedes aegypti's larval environment on adult body mass at emergence

Pooled testing of traced contacts under superspreading dynamics

Accurate influenza forecasts using type-specific incidence data for small geographic units

Time varying methods to infer extremes in dengue transmission dynamics

Marine heatwaves threaten global biodiversity and the provision of ecosystem services

A hierarchical approach to defining marine heatwaves

Focus on poleward shifts in species' distribution underestimates the fingerprint of climate change

Intrinsic Transparent Conductors without Doping

Li-Doped Cr2MnO4: A New p-Type Transparent Conducting Oxide by Computational Materials Design

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