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Liquid chromatography/mass spectrometry methods for measuring dipeptide abundance in non-small-cell lung cancer

Rapid communications in mass spectrometry, 2013-09, Vol.27 (18), p.2091-2098

2013

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MiDReG: A method of mining developmentally regulated genes using Boolean implications

Proceedings of the National Academy of Sciences - PNAS, 2010-03, Vol.107 (13), p.5732-5737

2010

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Counter-Example Based Predicate Discovery in Predicate Abstraction

Formal Methods in Computer-Aided Design, 2002, p.19-32

2002

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Deciding Presburger Arithmetic by Model Checking and Comparisons with Other Methods

Formal Methods in Computer-Aided Design, 2002, p.171-186

2002

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Timing assumptions and verification of finite-state concurrent systems

Automatic Verification Methods for Finite State Systems, 2005, p.197-212

2005

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Model-checking for probabilistic real-time systems

Automata, Languages and Programming, 2005, p.115-126

2005

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Model-Checking in Dense Real-Time

Information and computation, 1993-05, Vol.104 (1), p.2-34

1993

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Calculating the binding free energies of charged species based on explicit-solvent simulations employing lattice-sum methods: an accurate correction scheme for electrostatic finite-size effects

The Journal of chemical physics, 2013-11, Vol.139 (18), p.184103-184103

2013

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On the use of orientational restraints and symmetry corrections in alchemical free energy calculations

The Journal of chemical physics, 2006-08, Vol.125 (8), p.084902-084902

2006

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Proteostasis is adaptive: Balancing chaperone holdases against foldases

PLoS computational biology, 2020-12, Vol.16 (12), p.e1008460-e1008460

2020

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Small Molecule Hydration Free Energies in Explicit Solvent: An Extensive Test of Fixed-Charge Atomistic Simulations

Journal of chemical theory and computation, 2009-02, Vol.5 (2), p.350-358

2009

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Confine-and-Release Method: Obtaining Correct Binding Free Energies in the Presence of Protein Conformational Change

Journal of chemical theory and computation, 2007-07, Vol.3 (4), p.1231-1235

2007

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Comparison of Charge Models for Fixed-Charge Force Fields: Small-Molecule Hydration Free Energies in Explicit Solvent

The journal of physical chemistry. B, 2007-03, Vol.111 (9), p.2242-2254

2007

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Treating Entropy and Conformational Changes in Implicit Solvent Simulations of Small Molecules

The journal of physical chemistry. B, 2008-01, Vol.112 (3), p.938-946

2008

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Predictions of Hydration Free Energies from All-Atom Molecular Dynamics Simulations

The journal of physical chemistry. B, 2009-04, Vol.113 (14), p.4533-4537

2009

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Separated topologies--a method for relative binding free energy calculations using orientational restraints

The Journal of chemical physics, 2013-02, Vol.138 (8), p.085104-085104

2013

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Calculating the Sensitivity and Robustness of Binding Free Energy Calculations to Force Field Parameters

Journal of chemical theory and computation, 2013-07, Vol.9 (7), p.3072-3083

2013

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The Nanolithography Toolbox

Journal of research of the National Institute of Standards and Technology, 2016, Vol.121, p.464-475

2016

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Charge Asymmetries in Hydration of Polar Solutes

The journal of physical chemistry. B, 2008-02, Vol.112 (8), p.2405-2414

2008

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Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures

Proceedings of the National Academy of Sciences - PNAS, 2009-10, Vol.106 (41), p.17349-17354

2009

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Correction to Small Molecule Hydration Free Energies in Explicit Solvent: An Extensive Test of Fixed-Charge Atomistic Simulations

Journal of chemical theory and computation, 2015-03, Vol.11 (3), p.1347-1347

2015

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Quantitative determination of ion distributions in bacterial lipopolysaccharide membranes by grazing-incidence X-ray fluorescence

Proceedings of the National Academy of Sciences - PNAS, 2010-05, Vol.107 (20), p.9147-9151

2010

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Comparison of Charge Models for Fixed-Charge Force Fields: Small Molecule Hydration Free Energies in Explicit Solvent

The journal of physical chemistry. B, 2011-02, Vol.115 (5), p.1329-1332

2011

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Trajectory approach to two-state kinetics of single particles on sculpted energy landscapes

Physical review letters, 2009-07, Vol.103 (5), p.050603-050603, Article 050603

2009

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One-pot synthesis of cinnamylideneacetophenones and their in vitro cytotoxicity in breast cancer cells

Bioorganic & medicinal chemistry letters, 2014-08, Vol.24 (15), p.3381-3384

2014

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Liquid chromatography/mass spectrometry methods for measuring dipeptide abundance in non-small-cell lung cancer

MiDReG: A method of mining developmentally regulated genes using Boolean implications

Counter-Example Based Predicate Discovery in Predicate Abstraction

Deciding Presburger Arithmetic by Model Checking and Comparisons with Other Methods

Timing assumptions and verification of finite-state concurrent systems

Model-checking for probabilistic real-time systems

Model-Checking in Dense Real-Time

Calculating the binding free energies of charged species based on explicit-solvent simulations employing lattice-sum methods: an accurate correction scheme for electrostatic finite-size effects

On the use of orientational restraints and symmetry corrections in alchemical free energy calculations

Proteostasis is adaptive: Balancing chaperone holdases against foldases

Small Molecule Hydration Free Energies in Explicit Solvent: An Extensive Test of Fixed-Charge Atomistic Simulations

Confine-and-Release Method: Obtaining Correct Binding Free Energies in the Presence of Protein Conformational Change

Comparison of Charge Models for Fixed-Charge Force Fields: Small-Molecule Hydration Free Energies in Explicit Solvent

Treating Entropy and Conformational Changes in Implicit Solvent Simulations of Small Molecules

Predictions of Hydration Free Energies from All-Atom Molecular Dynamics Simulations

Separated topologies--a method for relative binding free energy calculations using orientational restraints

Calculating the Sensitivity and Robustness of Binding Free Energy Calculations to Force Field Parameters

The Nanolithography Toolbox

Charge Asymmetries in Hydration of Polar Solutes

Assembly mechanisms of RNA pseudoknots are determined by the stabilities of constituent secondary structures

Correction to Small Molecule Hydration Free Energies in Explicit Solvent: An Extensive Test of Fixed-Charge Atomistic Simulations

Quantitative determination of ion distributions in bacterial lipopolysaccharide membranes by grazing-incidence X-ray fluorescence

Comparison of Charge Models for Fixed-Charge Force Fields: Small Molecule Hydration Free Energies in Explicit Solvent

Trajectory approach to two-state kinetics of single particles on sculpted energy landscapes

One-pot synthesis of cinnamylideneacetophenones and their in vitro cytotoxicity in breast cancer cells

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