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Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use

PLoS pathogens, 2017-11, Vol.13 (11), p.e1006653

2017

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NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

Gigascience, 2018-12, Vol.7 (12)

2018

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Linking Statistical and Ecological Theory: Hubbell's Unified Neutral Theory of Biodiversity as a Hierarchical Dirichlet Process

Proceedings of the IEEE, 2017-03, Vol.105 (3), p.516-529

2017

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Dynamic gill and mucus microbiomes during a gill disease episode in farmed Atlantic salmon

Scientific reports, 2022-10, Vol.12 (1), p.16719-16719, Article 16719

2022

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The potential of sedimentary ancient DNA for reconstructing past sea ice evolution

The ISME Journal, 2019-10, Vol.13 (10), p.2566-2577

2019

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Differential ratio amplicons (Ramp) for the evaluation of RNA integrity extracted from complex environmental samples

Environmental microbiology, 2019-02, Vol.21 (2), p.827-844

2019

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Nonlinear machine learning pattern recognition and bacteria-metabolite multilayer network analysis of perturbed gastric microbiome

Nature communications, 2021-03, Vol.12 (1), p.1926-1926, Article 1926

2021

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Carboxylic acids production and electrosynthetic microbial community evolution under different CO2 feeding regimens

Bioelectrochemistry (Amsterdam, Netherlands), 2021-02, Vol.137, p.107686-107686, Article 107686

2021

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Disinfection exhibits systematic impacts on the drinking water microbiome

Microbiome, 2020-03, Vol.8 (1), p.42-42, Article 42

2020

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ATH-09 Metabolomics & multi-omics analysis of Crohn’s disease

Gut, 2019-06, Vol.68 (Suppl 2), p.A68

2019

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Systems biology approach to elucidation of contaminant biodegradation in complex samples - integration of high-resolution analytical and molecular tools

Faraday discussions, 2019-08, Vol.218, p.481-54

2019

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Solar Septic Tank: Next Generation Sequencing Reveals Effluent Microbial Community Composition as a Useful Index of System Performance

Water (Basel), 2019-12, Vol.11 (12), p.2660

2019

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Exploration of marine bacterioplankton community assembly mechanisms during chemical dispersant and surfactant‐assisted oil biodegradation

Ecology and evolution, 2021-10, Vol.11 (20), p.13862-13874

2021

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16S rRNA sequencing reveals likely beneficial core microbes within faecal samples of the EU protected slug Geomalacus maculosus

Scientific reports, 2018-07, Vol.8 (1), p.10402-9, Article 10402

2018

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Effects of bio‐based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition

Global change biology. Bioenergy, 2017-12, Vol.9 (12), p.1707-1720

2017

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Network analysis of gut microbial communities reveal key genera for a multiple sclerosis cohort with Mycobacterium avium subspecies paratuberculosis infection

Gut pathogens, 2024-07, Vol.16 (1), p.37-12, Article 37

2024

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The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred

PloS one, 2017-02, Vol.12 (2), p.e0172605-e0172605

2017

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Beyond Basic Diversity Estimates-Analytical Tools for Mechanistic Interpretations of Amplicon Sequencing Data

Microorganisms (Basel), 2022-10, Vol.10 (10), p.1961

2022

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A Cross-Sectional Study of Potential Antimicrobial Resistance and Ecology in Gastrointestinal and Oral Microbial Communities of Young Normoweight Pakistani Individuals

Microorganisms (Basel), 2023-01, Vol.11 (2), p.279

2023

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Disease Resistance Correlates with Core Microbiome Diversity in Cotton

Current microbiology, 2024-09, Vol.81 (9), p.302, Article 302

2024

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Gut metabolome and microbiota signatures predict response to treatment with exclusive enteral nutrition in a prospective study in children with active Crohn’s disease

The American journal of clinical nutrition, 2024-04, Vol.119 (4), p.885-895

2024

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Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use

NanoAmpli-Seq: a workflow for amplicon sequencing for mixed microbial communities on the nanopore sequencing platform

Linking Statistical and Ecological Theory: Hubbell's Unified Neutral Theory of Biodiversity as a Hierarchical Dirichlet Process

Dynamic gill and mucus microbiomes during a gill disease episode in farmed Atlantic salmon

The potential of sedimentary ancient DNA for reconstructing past sea ice evolution

Differential ratio amplicons (Ramp) for the evaluation of RNA integrity extracted from complex environmental samples

Nonlinear machine learning pattern recognition and bacteria-metabolite multilayer network analysis of perturbed gastric microbiome

Carboxylic acids production and electrosynthetic microbial community evolution under different CO2 feeding regimens

Disinfection exhibits systematic impacts on the drinking water microbiome

ATH-09 Metabolomics & multi-omics analysis of Crohn’s disease

Systems biology approach to elucidation of contaminant biodegradation in complex samples - integration of high-resolution analytical and molecular tools

Solar Septic Tank: Next Generation Sequencing Reveals Effluent Microbial Community Composition as a Useful Index of System Performance

Exploration of marine bacterioplankton community assembly mechanisms during chemical dispersant and surfactant‐assisted oil biodegradation

16S rRNA sequencing reveals likely beneficial core microbes within faecal samples of the EU protected slug Geomalacus maculosus

Effects of bio‐based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition

Network analysis of gut microbial communities reveal key genera for a multiple sclerosis cohort with Mycobacterium avium subspecies paratuberculosis infection

The distinct features of microbial 'dysbiosis' of Crohn's disease do not occur to the same extent in their unaffected, genetically-linked kindred

Beyond Basic Diversity Estimates-Analytical Tools for Mechanistic Interpretations of Amplicon Sequencing Data

A Cross-Sectional Study of Potential Antimicrobial Resistance and Ecology in Gastrointestinal and Oral Microbial Communities of Young Normoweight Pakistani Individuals

Disease Resistance Correlates with Core Microbiome Diversity in Cotton

Gut metabolome and microbiota signatures predict response to treatment with exclusive enteral nutrition in a prospective study in children with active Crohn’s disease

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