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Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm

eLife, 2016-11, Vol.5

2016

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Sliding of proteins non-specifically bound to DNA: Brownian dynamics studies with coarse-grained protein and DNA models

PLoS computational biology, 2014-12, Vol.10 (12), p.e1003990-e1003990

2014

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Hi-CO: 3D genome structure analysis with nucleosome resolution

Nature protocols, 2021-07, Vol.16 (7), p.3439-3469

2021

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Mechanism of Chiral-Selective Aminoacylation of an RNA Minihelix Explored by QM/MM Free-Energy Simulations

Life (Basel, Switzerland), 2023-03, Vol.13 (3), p.722

2023

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Cooperative regulation of endocytic vesicle transport by yeast Eps15-like protein Pan1p and epsins

The Journal of biological chemistry, 2021-11, Vol.297 (5), p.101254-101254, Article 101254

2021

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The crystal structure of the tetrameric human vasohibin‐1–SVBP complex reveals a variable arm region within the structural core

Acta crystallographica. Section D, Biological crystallography., 2020-10, Vol.76 (10), p.993-1000

2020

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Molecular Anatomy of the Class I Ligase Ribozyme for Elucidation of the Activity-Generating Unit

Biology (Basel, Switzerland), 2023-07, Vol.12 (7), p.1012

2023

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G:U-Independent RNA Minihelix Aminoacylation by Nanoarchaeum equitans Alanyl-tRNA Synthetase: An Insight into the Evolution of Aminoacyl-tRNA Synthetases

Journal of molecular evolution, 2020-08, Vol.88 (6), p.501-509

2020

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Effects of a superoptimal temperature on aquacultured yellowtail Seriola quinqueradiata

Fisheries science, 2018-11, Vol.84 (6), p.1063-1071

2018

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Glycyl-tRNA synthetase from Nanoarchaeum equitans: The first crystal structure of archaeal GlyRS and analysis of its tRNA glycylation

Biochemical and biophysical research communications, 2019-04, Vol.511 (2), p.228-233

2019

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RNA Aptamers for a tRNA-Binding Protein from Aeropyrum pernix with Homologous Counterparts Distributed Throughout Evolution

Life (Basel, Switzerland), 2020-02, Vol.10 (2), p.11

2020

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On the Importance of Hydrodynamic Interactions in Lipid Membrane Formation

Biophysical journal, 2013-01, Vol.104 (1), p.96-105

2013

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A patient with a 6q22.1 deletion and a phenotype of non-progressive early-onset generalized epilepsy with tremor

Epilepsy & behavior reports, 2021-01, Vol.15, p.100405-100405, Article 100405

2021

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Role of Asp187 and Gln190 in the Na+/proline symporter (PutP) of Escherichia coli

Journal of biochemistry (Tokyo), 2011-10, Vol.150 (4), p.395-402

2011

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Sub-nucleosomal Genome Structure Reveals Distinct Nucleosome Folding Motifs

Cell, 2019-01, Vol.176 (3), p.520-534.e25

2019

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Relationship between mineral composition or soil texture and available silicon in alluvial paddy soils on the Shounai Plain, Japan

Soil science and plant nutrition (Tokyo), 2009-04, Vol.55 (2), p.300-308

2009

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Binding characteristics of the doxepin E/Z‐isomers to the histamine H1 receptor revealed by receptor‐bound ligand analysis and molecular dynamics study

Journal of molecular recognition, 2024-09, Vol.37 (5), p.e3098-n/a

2024

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Elucidation of productive alanine recognition mechanism by Escherichia coli alanyl-tRNA synthetase

BioSystems, 2024-03, Vol.237, p.105152-105152, Article 105152

2024

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Status of GPCR Modeling and Docking as Reflected by Community-wide GPCR Dock 2010 Assessment

Structure (London), 2011-08, Vol.19 (8), p.1108-1126

2011

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An investigation into the effects and prognostic factors of cognitive decline following subthalamic nucleus stimulation in patients with Parkinson’s disease

Journal of clinical neuroscience, 2017-10, Vol.44, p.164-168

2017

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Attenuation of fluctuating striatal synaptic dopamine levels in patients with Parkinson disease in response to subthalamic nucleus stimulation: a positron emission tomography study

Journal of neurosurgery, 2005-12, Vol.103 (6), p.968

2005

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Left–right asymmetry is formed in individual cells by intrinsic cell chirality

Mechanisms of development, 2014-08, Vol.133, p.146-162

2014

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The role of sigma-receptors in levodopa-induced dyskinesia in patients with advanced Parkinson disease: a positron emission tomography study

Journal of neurosurgery, 2004-04, Vol.100 (4), p.606

2004

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Two Molecular Forms of Insulin from Barfin Flounder, Verasper moseri, are Derived from a Single Gene

Zoological Science, 1998-12, Vol.15 (6), p.931-937

1998

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Purification and Structural Determination of Insulins, Glucagons and Somatostatin from Stone Flounder, Kareius bicoloratus

Zoological Science, 1998-12, Vol.15 (6), p.939-943

1998

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Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm

Sliding of proteins non-specifically bound to DNA: Brownian dynamics studies with coarse-grained protein and DNA models

Hi-CO: 3D genome structure analysis with nucleosome resolution

Mechanism of Chiral-Selective Aminoacylation of an RNA Minihelix Explored by QM/MM Free-Energy Simulations

Cooperative regulation of endocytic vesicle transport by yeast Eps15-like protein Pan1p and epsins

The crystal structure of the tetrameric human vasohibin‐1–SVBP complex reveals a variable arm region within the structural core

Molecular Anatomy of the Class I Ligase Ribozyme for Elucidation of the Activity-Generating Unit

G:U-Independent RNA Minihelix Aminoacylation by Nanoarchaeum equitans Alanyl-tRNA Synthetase: An Insight into the Evolution of Aminoacyl-tRNA Synthetases

Effects of a superoptimal temperature on aquacultured yellowtail Seriola quinqueradiata

Glycyl-tRNA synthetase from Nanoarchaeum equitans: The first crystal structure of archaeal GlyRS and analysis of its tRNA glycylation

RNA Aptamers for a tRNA-Binding Protein from Aeropyrum pernix with Homologous Counterparts Distributed Throughout Evolution

On the Importance of Hydrodynamic Interactions in Lipid Membrane Formation

A patient with a 6q22.1 deletion and a phenotype of non-progressive early-onset generalized epilepsy with tremor

Role of Asp187 and Gln190 in the Na+/proline symporter (PutP) of Escherichia coli

Sub-nucleosomal Genome Structure Reveals Distinct Nucleosome Folding Motifs

Relationship between mineral composition or soil texture and available silicon in alluvial paddy soils on the Shounai Plain, Japan

Binding characteristics of the doxepin E/Z‐isomers to the histamine H1 receptor revealed by receptor‐bound ligand analysis and molecular dynamics study

Elucidation of productive alanine recognition mechanism by Escherichia coli alanyl-tRNA synthetase

Status of GPCR Modeling and Docking as Reflected by Community-wide GPCR Dock 2010 Assessment

An investigation into the effects and prognostic factors of cognitive decline following subthalamic nucleus stimulation in patients with Parkinson’s disease

Attenuation of fluctuating striatal synaptic dopamine levels in patients with Parkinson disease in response to subthalamic nucleus stimulation: a positron emission tomography study

Left–right asymmetry is formed in individual cells by intrinsic cell chirality

The role of sigma-receptors in levodopa-induced dyskinesia in patients with advanced Parkinson disease: a positron emission tomography study

Two Molecular Forms of Insulin from Barfin Flounder, Verasper moseri, are Derived from a Single Gene

Purification and Structural Determination of Insulins, Glucagons and Somatostatin from Stone Flounder, Kareius bicoloratus

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