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Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid

Molecular cell, 2020-12, Vol.80 (6), p.1078-1091.e6

2020

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Functional classification of long non-coding RNAs by k-mer content

Nature genetics, 2018-10, Vol.50 (10), p.1474-1482

2018

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High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

PLoS biology, 2008-04, Vol.6 (4), p.e96-e96

2008

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Targeting the Oncogenic Long Non-coding RNA SLNCR1 by Blocking Its Sequence-Specific Binding to the Androgen Receptor

Cell reports (Cambridge), 2020-01, Vol.30 (2), p.541-554.e5

2020

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Comparison of SIV and HIV-1 genomic RNA structures reveals impact of sequence evolution on conserved and non-conserved structural motifs

PLoS pathogens, 2013-04, Vol.9 (4), p.e1003294

2013

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RNA Structures Facilitate Recombination-Mediated Gene Swapping in HIV-1

Journal of Virology, 2010-12, Vol.84 (24), p.12675-12682

2010

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Messenger RNA Structure Regulates Translation Initiation: A Mechanism Exploited from Bacteria to Humans

Biochemistry (Easton), 2018-07, Vol.57 (26), p.3537-3539

2018

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Analysis of RNA-protein networks with RNP-MaP defines functional hubs on RNA

Nature biotechnology, 2021-03, Vol.39 (3), p.347-356

2021

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RNA base-pairing complexity in living cells visualized by correlated chemical probing

Proceedings of the National Academy of Sciences - PNAS, 2019-12, Vol.116 (49), p.24574-24582

2019

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Discovery of a large-scale, cell-state-responsive allosteric switch in the 7SK RNA using DANCE-MaP

Molecular cell, 2022-05, Vol.82 (9), p.1708-1723.e10

2022

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Structure-first identification of RNA elements that regulate dengue virus genome architecture and replication

Proceedings of the National Academy of Sciences - PNAS, 2023-04, Vol.120 (15), p.e2217053120-e2217053120

2023

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QuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis

RNA (Cambridge), 2013-01, Vol.19 (1), p.63-73

2013

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Role of Context in RNA Structure: Flanking Sequences Reconfigure CAG Motif Folding in Huntingtin Exon 1 Transcripts

Biochemistry (Easton), 2013-11, Vol.52 (46), p.8219-8225

2013

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Global 5'-UTR RNA structure regulates translation of a SERPINA1 mRNA

Nucleic acids research, 2022-09, Vol.50 (17), p.9689-9704

2022

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Multiple conformations are a conserved and regulatory feature of the RB1 5' UTR

RNA (Cambridge), 2015-07, Vol.21 (7), p.1274-1285

2015

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Fluorogenic Resolution of Ligand Binding by a Nucleic Acid Aptamer

Journal of the American Chemical Society, 2003-10, Vol.125 (41), p.12370-12371

2003

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An RNA structure-mediated, posttranscriptional model of human α-1-antitrypsin expression

Proceedings of the National Academy of Sciences - PNAS, 2017-11, Vol.114 (47), p.E10244-E10253

2017

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Structure modeling of RNA using sparse NMR constraints

Nucleic acids research, 2017-12, Vol.45 (22), p.12638-12647

2017

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IFNL3 mRNA structure is remodeled by a functional non-coding polymorphism associated with hepatitis C virus clearance

Scientific reports, 2015-11, Vol.5 (1), p.16037-16037, Article 16037

2015

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Anti-cooperative assembly of the SRP19 and SRP68/72 components of the signal recognition particle

Biochemical journal, 2008-11, Vol.415 (3), p.429-437

2008

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The roles of five conserved lentiviral RNA structures in HIV-1 replication

Virology (New York, N.Y.), 2018-01, Vol.514, p.1-8

2018

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SHAPE-directed Discovery of Potent shRNA Inhibitors of HIV-1

Molecular therapy, 2012-04, Vol.20 (4), p.820-828

2012

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Sharing and archiving nucleic acid structure mapping data

RNA (Cambridge), 2011-07, Vol.17 (7), p.1204-1212

2011

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A Threefold RNA–Protein Interface in the Signal Recognition Particle Gates Native Complex Assembly

Journal of molecular biology, 2007-06, Vol.369 (2), p.512-524

2007

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Compartmentalization Directs Assembly of the Signal Recognition Particle

Biochemistry (Easton), 2006-12, Vol.45 (50), p.14955-14964

2006

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Genomic RNA Elements Drive Phase Separation of the SARS-CoV-2 Nucleocapsid

Functional classification of long non-coding RNAs by k-mer content

High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

Targeting the Oncogenic Long Non-coding RNA SLNCR1 by Blocking Its Sequence-Specific Binding to the Androgen Receptor

Comparison of SIV and HIV-1 genomic RNA structures reveals impact of sequence evolution on conserved and non-conserved structural motifs

RNA Structures Facilitate Recombination-Mediated Gene Swapping in HIV-1

Messenger RNA Structure Regulates Translation Initiation: A Mechanism Exploited from Bacteria to Humans

Analysis of RNA-protein networks with RNP-MaP defines functional hubs on RNA

RNA base-pairing complexity in living cells visualized by correlated chemical probing

Discovery of a large-scale, cell-state-responsive allosteric switch in the 7SK RNA using DANCE-MaP

Structure-first identification of RNA elements that regulate dengue virus genome architecture and replication

QuShape: rapid, accurate, and best-practices quantification of nucleic acid probing information, resolved by capillary electrophoresis

Role of Context in RNA Structure: Flanking Sequences Reconfigure CAG Motif Folding in Huntingtin Exon 1 Transcripts

Global 5'-UTR RNA structure regulates translation of a SERPINA1 mRNA

Multiple conformations are a conserved and regulatory feature of the RB1 5' UTR

Fluorogenic Resolution of Ligand Binding by a Nucleic Acid Aptamer

An RNA structure-mediated, posttranscriptional model of human α-1-antitrypsin expression

Structure modeling of RNA using sparse NMR constraints

IFNL3 mRNA structure is remodeled by a functional non-coding polymorphism associated with hepatitis C virus clearance

Anti-cooperative assembly of the SRP19 and SRP68/72 components of the signal recognition particle

The roles of five conserved lentiviral RNA structures in HIV-1 replication

SHAPE-directed Discovery of Potent shRNA Inhibitors of HIV-1

Sharing and archiving nucleic acid structure mapping data

A Threefold RNA–Protein Interface in the Signal Recognition Particle Gates Native Complex Assembly

Compartmentalization Directs Assembly of the Signal Recognition Particle

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