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RResolver: efficient short-read repeat resolution within ABySS

BMC bioinformatics, 2022-06, Vol.23 (1), p.246-246, Article 246

2022

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Targeted assembly of short sequence reads

PloS one, 2011-05, Vol.6 (5), p.e19816-e19816

2011

Volltextzugriff (PDF)

Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma

Genome research, 2012-02, Vol.22 (2), p.299

2012

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ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

BMC bioinformatics, 2018-06, Vol.19 (1), p.234-234, Article 234

2018

Volltextzugriff (PDF)

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

Genome research, 2017-05, Vol.27 (5), p.768

2017

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Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes

Genome research, 2011-05, Vol.21 (5), p.790

2011

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Brain microbial populations in HIV/AIDS: α-proteobacteria predominate independent of host immune status

PloS one, 2013-01, Vol.8 (1), p.e54673-e54673

2013

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Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

Nature (London), 2009-10, Vol.461 (7265), p.809-813

2009

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Sealer: a scalable gap-closing application for finishing draft genomes

BMC bioinformatics, 2015-07, Vol.16 (1), p.230-230, Article 230

2015

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Linear time complexity de novo long read genome assembly with GoldRush

Nature communications, 2023-05, Vol.14 (1), p.2906-9, Article 2906

2023

Volltextzugriff (PDF)

Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing

Genome Research, 2009-10, Vol.19 (10), p.1817-1824

2009

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Complete Haplotype Sequence of the Human Immunoglobulin Heavy-Chain Variable, Diversity, and Joining Genes and Characterization of Allelic and Copy-Number Variation

American journal of human genetics, 2013-04, Vol.92 (4), p.530-546

2013

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Interactive SARS-CoV-2 mutation timemaps [version 1; peer review: 3 approved with reservations]

F1000 research, 2021, Vol.10, p.68

2021

Volltextzugriff (PDF)

Establishing association between HLA‐C04:01 and severe COVID‐19

HLA, 2024-01, Vol.103 (1), p.e15355-n/a

2024

Volltextzugriff (PDF)

Tigmint: correcting assembly errors using linked reads from large molecules

BMC bioinformatics, 2018-10, Vol.19 (1), p.393-393, Article 393

2018

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Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes

BMC genomics, 2018-07, Vol.19 (1), p.536-536, Article 536

2018

Volltextzugriff (PDF)

Establishment of an eHAP1 human haploid cell line hybrid reference genome assembled from short and long reads

Genomics (San Diego, Calif.), 2020-05, Vol.112 (3), p.2379-2384

2020

Volltextzugriff (PDF)

Kollector: transcript-informed, targeted de novo assembly of gene loci

Bioinformatics (Oxford, England), 2017-06, Vol.33 (12), p.1782-1788

2017

Volltextzugriff (PDF)

GapPredict - A Language Model for Resolving Gaps in Draft Genome Assemblies

IEEE/ACM transactions on computational biology and bioinformatics, 2021-11, Vol.18 (6), p.2802-2808

2021

Volltextzugriff (PDF)

The sensitivity of massively parallel sequencing for detecting candidate infectious agents associated with human tissue

PloS one, 2011-05, Vol.6 (5), p.e19838-e19838

2011

Volltextzugriff (PDF)

XLF deficiency results in reduced N-nucleotide addition during V(D)J recombination

Blood, 2016-08, Vol.128 (5), p.650-659

2016

Volltextzugriff (PDF)

Transcription of foreign DNA in Escherichia coli

Genome Research, 2008-11, Vol.18 (11), p.1798-1805

2008

Volltextzugriff (PDF)

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach

BMC genomics, 2006-09, Vol.7 (1), p.246-246, Article 246

2006

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A census of predicted mutational epitopes suitable for immunologic cancer control

Human immunology, 2010-03, Vol.71 (3), p.245-254

2010

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ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

Bioinformatics, 2020-06, Vol.36 (12), p.3885-3887

2020

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RResolver: efficient short-read repeat resolution within ABySS

Targeted assembly of short sequence reads

Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma

ARKS: chromosome-scale scaffolding of human genome drafts with linked read kmers

ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter

Exhaustive T-cell repertoire sequencing of human peripheral blood samples reveals signatures of antigen selection and a directly measured repertoire size of at least 1 million clonotypes

Brain microbial populations in HIV/AIDS: α-proteobacteria predominate independent of host immune status

Mutational evolution in a lobular breast tumour profiled at single nucleotide resolution

Sealer: a scalable gap-closing application for finishing draft genomes

Linear time complexity de novo long read genome assembly with GoldRush

Profiling the T-cell receptor beta-chain repertoire by massively parallel sequencing

Complete Haplotype Sequence of the Human Immunoglobulin Heavy-Chain Variable, Diversity, and Joining Genes and Characterization of Allelic and Copy-Number Variation

Interactive SARS-CoV-2 mutation timemaps [version 1; peer review: 3 approved with reservations]

Establishing association between HLA‐C04:01 and severe COVID‐19

Tigmint: correcting assembly errors using linked reads from large molecules

Recurrent tumor-specific regulation of alternative polyadenylation of cancer-related genes

Establishment of an eHAP1 human haploid cell line hybrid reference genome assembled from short and long reads

Kollector: transcript-informed, targeted de novo assembly of gene loci

GapPredict - A Language Model for Resolving Gaps in Draft Genome Assemblies

The sensitivity of massively parallel sequencing for detecting candidate infectious agents associated with human tissue

XLF deficiency results in reduced N-nucleotide addition during V(D)J recombination

Transcription of foreign DNA in Escherichia coli

Analysis of the prostate cancer cell line LNCaP transcriptome using a sequencing-by-synthesis approach

A census of predicted mutational epitopes suitable for immunologic cancer control

ntJoin: Fast and lightweight assembly-guided scaffolding using minimizer graphs

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