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Financial Costs of Meeting Global Biodiversity Conservation Targets: Current Spending and Unmet Needs

Science (American Association for the Advancement of Science), 2012-11, Vol.338 (6109), p.946-949

2012

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Cancer genomes tolerate deleterious coding mutations through somatic copy number amplifications of wild-type regions

Nature communications, 2023-06, Vol.14 (1), p.3594-3594, Article 3594

2023

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HIPPIE: Integrating protein interaction networks with experiment based quality scores

PloS one, 2012-02, Vol.7 (2), p.e31826-e31826

2012

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Translational efficiency across healthy and tumor tissues is proliferation‐related

Molecular systems biology, 2020-03, Vol.16 (3), p.e9275-n/a

2020

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Using protein-per-mRNA differences among human tissues in codon optimization

Genome Biology, 2023-02, Vol.24 (1), p.34-34, Article 34

2023

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Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome

Genome Biology, 2018-05, Vol.19 (1), p.67-67, Article 67

2018

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Evolution and function of CAG/polyglutamine repeats in protein-protein interaction networks

Nucleic acids research, 2012-05, Vol.40 (10), p.4273-4287

2012

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Are Fruit Colors Adapted to Consumer Vision and Birds Equally Efficient in Detecting Colorful Signals?

The American naturalist, 2007-01, Vol.169 (S1), p.S159-S169

2007

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Regulation of protein complex partners as a compensatory mechanism in aneuploid tumors

eLife, 2022-05, Vol.11

2022

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Protein conservation and variation suggest mechanisms of cell type-specific modulation of signaling pathways

PLoS computational biology, 2014-06, Vol.10 (6), p.e1003659-e1003659

2014

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Adding protein context to the human protein-protein interaction network to reveal meaningful interactions

PLoS computational biology, 2013-01, Vol.9 (1), p.e1002860-e1002860

2013

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HIPPIE v2.0: enhancing meaningfulness and reliability of protein-protein interaction networks

Nucleic acids research, 2017-01, Vol.45 (D1), p.D408-D414

2017

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Location and condition based reconstruction of colon cancer microbiome from human RNA sequencing data

Genome medicine, 2023-05, Vol.15 (1), p.32-32, Article 32

2023

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DNA methylation variation along the cancer epigenome and the identification of novel epigenetic driver events

Nucleic acids research, 2021-12, Vol.49 (22), p.12692-12705

2021

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Cell type-specific properties and environment shape tissue specificity of cancer genes

Scientific reports, 2016-02, Vol.6 (1), p.20707-20707, Article 20707

2016

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A network of epigenetic modifiers and DNA repair genes controls tissue-specific copy number alteration preference

eLife, 2016-11, Vol.5

2016

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Mutation bias within oncogene families is related to proliferation-specific codon usage

Proceedings of the National Academy of Sciences - PNAS, 2020-12, Vol.117 (48), p.30848-30856

2020

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Identification of human proteins that modify misfolding and proteotoxicity of pathogenic ataxin-1

PLoS genetics, 2012-08, Vol.8 (8), p.e1002897-e1002897

2012

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Generation and Interpretation of Context-Specific Human Protein-Protein Interaction Networks with HIPPIE

Methods in molecular biology (Clifton, N.J.), 2020-01, Vol.2074, p.135

2020

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Translational adaptation of human viruses to the tissues they infect

Cell reports (Cambridge), 2021-03, Vol.34 (11), p.108872-108872, Article 108872

2021

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Characterizing protein interactions employing a genome-wide siRNA cellular phenotyping screen

PLoS computational biology, 2014-09, Vol.10 (9), p.e1003814-e1003814

2014

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Urban forests as hubs for novel zoonosis: blood meal analysis, seasonal variation in Culicoides (Diptera: Ceratopogonidae) vectors, and avian haemosporidians

Parasitology, 2013-12, Vol.140 (14), p.1799-1810

2013

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Aggregation of polyQ-extended proteins is promoted by interaction with their natural coiled-coil partners

BioEssays, 2013-06, Vol.35 (6), p.503-507

2013

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SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations

Nucleic acids research, 2013-01, Vol.41 (Database issue), p.D834-D840

2013

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Development and application of a DNA microarray-based yeast two-hybrid system

Nucleic acids research, 2013-02, Vol.41 (3), p.1496-1507

2013

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Financial Costs of Meeting Global Biodiversity Conservation Targets: Current Spending and Unmet Needs

Cancer genomes tolerate deleterious coding mutations through somatic copy number amplifications of wild-type regions

HIPPIE: Integrating protein interaction networks with experiment based quality scores

Translational efficiency across healthy and tumor tissues is proliferation‐related

Using protein-per-mRNA differences among human tissues in codon optimization

Negative selection in tumor genome evolution acts on essential cellular functions and the immunopeptidome

Evolution and function of CAG/polyglutamine repeats in protein-protein interaction networks

Are Fruit Colors Adapted to Consumer Vision and Birds Equally Efficient in Detecting Colorful Signals?

Regulation of protein complex partners as a compensatory mechanism in aneuploid tumors

Protein conservation and variation suggest mechanisms of cell type-specific modulation of signaling pathways

Adding protein context to the human protein-protein interaction network to reveal meaningful interactions

HIPPIE v2.0: enhancing meaningfulness and reliability of protein-protein interaction networks

Location and condition based reconstruction of colon cancer microbiome from human RNA sequencing data

DNA methylation variation along the cancer epigenome and the identification of novel epigenetic driver events

Cell type-specific properties and environment shape tissue specificity of cancer genes

A network of epigenetic modifiers and DNA repair genes controls tissue-specific copy number alteration preference

Mutation bias within oncogene families is related to proliferation-specific codon usage

Identification of human proteins that modify misfolding and proteotoxicity of pathogenic ataxin-1

Generation and Interpretation of Context-Specific Human Protein-Protein Interaction Networks with HIPPIE

Translational adaptation of human viruses to the tissues they infect

Characterizing protein interactions employing a genome-wide siRNA cellular phenotyping screen

Urban forests as hubs for novel zoonosis: blood meal analysis, seasonal variation in Culicoides (Diptera: Ceratopogonidae) vectors, and avian haemosporidians

Aggregation of polyQ-extended proteins is promoted by interaction with their natural coiled-coil partners

SynSysNet: integration of experimental data on synaptic protein-protein interactions with drug-target relations

Development and application of a DNA microarray-based yeast two-hybrid system

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