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Pseudofinder: Detection of Pseudogenes in Prokaryotic Genomes

Molecular biology and evolution, 2022-07, Vol.39 (7)

2022

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Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista

Proceedings of the Royal Society. B, Biological sciences, 2016-01, Vol.283 (1823), p.20152802

2016

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evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins

Proceedings of the Royal Society. B, Biological sciences, 2012-06, Vol.279 (1736), p.2246-2254

2012

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Functional Relationship between a Dinoflagellate Host and Its Diatom Endosymbiont

Molecular biology and evolution, 2016-09, Vol.33 (9), p.2376-2390

2016

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Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae

Nature communications, 2021-11, Vol.12 (1), p.6651-6651, Article 6651

2021

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Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

BMC evolutionary biology, 2010-12, Vol.10 (1), p.377

2010

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Divergent mitochondrial respiratory chains in phototrophic relatives of apicomplexan parasites

Molecular biology and evolution, 2015-05, Vol.32 (5), p.1115-1131

2015

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The Complete Chloroplast Genome of the Chlorarachniophyte Bigelowiella natans: Evidence for Independent Origins of Chlorarachniophyte and Euglenid Secondary Endosymbionts

Molecular biology and evolution, 2007-01, Vol.24 (1), p.54-62

2007

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Phylogenomic analyses of ochrophytes (stramenopiles) with an emphasis on neglected lineages

Molecular phylogenetics and evolution, 2024-09, Vol.198, p.108120, Article 108120

2024

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Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia

Molecular biology and evolution, 2013-11, Vol.30 (11), p.2447-2462

2013

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Symbionts of the ciliate Euplotes: diversity, patterns and potential as models for bacteria-eukaryote endosymbioses

Proceedings of the Royal Society. B, Biological sciences, 2019-07, Vol.286 (1907), p.20190693

2019

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The inadequacy of morphology for species and genus delineation in microbial eukaryotes: an example from the parabasalian termite symbiont coronympha

PloS one, 2009-08, Vol.4 (8), p.e6577-e6577

2009

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Microbial communities in sandy beaches from the three domains of life differ by microhabitat and intertidal location

Molecular ecology, 2022-06, Vol.31 (11), p.3210-3227

2022

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Dinoflagellate nuclear SSU rRNA phylogeny suggests multiple plastid losses and replacements

Journal of molecular evolution, 2001-09, Vol.53 (3), p.204-213

2001

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Complex phylogenetic distribution of a non-canonical genetic code in green algae

BMC evolutionary biology, 2010-10, Vol.10 (1), p.327

2010

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Phylogenomics reveals Adeleorina are an ancient and distinct subgroup of Apicomplexa

Molecular phylogenetics and evolution, 2024-06, Vol.195, p.108060-108060, Article 108060

2024

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Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean

Molecular phylogenetics and evolution, 2024-01, Vol.190, p.107964-107964, Article 107964

2024

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A comprehensive kelp phylogeny sheds light on the evolution of an ecosystem

Molecular phylogenetics and evolution, 2019-07, Vol.136, p.138-150

2019

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Monophyly of diverse Bigyromonadea and their impact on phylogenomic relationships within stramenopiles

Molecular phylogenetics and evolution, 2022-06, Vol.171, p.107468-107468, Article 107468

2022

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Characterization of periplastidal compartment-targeting signals in chlorarachniophytes

Molecular biology and evolution, 2010-07, Vol.27 (7), p.1538-1545

2010

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Reconstruction of Plastid Proteomes of Apicomplexans and Close Relatives Reveals the Major Evolutionary Outcomes of Cryptic Plastids

Molecular biology and evolution, 2023-01, Vol.40 (1)

2023

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Investigation of heterotrophs reveals new insights in dinoflagellate evolution

Molecular phylogenetics and evolution, 2024-07, Vol.196, p.108086-108086, Article 108086

2024

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Early eukaryotic origins and metazoan elaboration of MAPR family proteins

Molecular phylogenetics and evolution, 2020-07, Vol.148, p.106814-106814, Article 106814

2020

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Lateral transfer and recompartmentalization of Calvin cycle enzymes of plants and algae

Journal of molecular evolution, 2004-04, Vol.58 (4), p.367-375

2004

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Phylogenomics supports the monophyly of the Cercozoa

Molecular phylogenetics and evolution, 2019-01, Vol.130, p.416-423

2019

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Pseudofinder: Detection of Pseudogenes in Prokaryotic Genomes

Untangling the early diversification of eukaryotes: a phylogenomic study of the evolutionary origins of Centrohelida, Haptophyta and Cryptista

evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins

Functional Relationship between a Dinoflagellate Host and Its Diatom Endosymbiont

Single cell genomics reveals plastid-lacking Picozoa are close relatives of red algae

Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists

Divergent mitochondrial respiratory chains in phototrophic relatives of apicomplexan parasites

The Complete Chloroplast Genome of the Chlorarachniophyte Bigelowiella natans: Evidence for Independent Origins of Chlorarachniophyte and Euglenid Secondary Endosymbionts

Phylogenomic analyses of ochrophytes (stramenopiles) with an emphasis on neglected lineages

Split photosystem protein, linear-mapping topology, and growth of structural complexity in the plastid genome of Chromera velia

Symbionts of the ciliate Euplotes: diversity, patterns and potential as models for bacteria-eukaryote endosymbioses

The inadequacy of morphology for species and genus delineation in microbial eukaryotes: an example from the parabasalian termite symbiont coronympha

Microbial communities in sandy beaches from the three domains of life differ by microhabitat and intertidal location

Dinoflagellate nuclear SSU rRNA phylogeny suggests multiple plastid losses and replacements

Complex phylogenetic distribution of a non-canonical genetic code in green algae

Phylogenomics reveals Adeleorina are an ancient and distinct subgroup of Apicomplexa

Phylogenomic position of genetically diverse phagotrophic stramenopile flagellates in the sediment-associated MAST-6 lineage and a potentially halotolerant placididean

A comprehensive kelp phylogeny sheds light on the evolution of an ecosystem

Monophyly of diverse Bigyromonadea and their impact on phylogenomic relationships within stramenopiles

Characterization of periplastidal compartment-targeting signals in chlorarachniophytes

Reconstruction of Plastid Proteomes of Apicomplexans and Close Relatives Reveals the Major Evolutionary Outcomes of Cryptic Plastids

Investigation of heterotrophs reveals new insights in dinoflagellate evolution

Early eukaryotic origins and metazoan elaboration of MAPR family proteins

Lateral transfer and recompartmentalization of Calvin cycle enzymes of plants and algae

Phylogenomics supports the monophyly of the Cercozoa

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