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Effect of Local Anesthetic Lidocaine on Electrostatic Properties of a Lipid Bilayer

Biophysical journal, 2008-01, Vol.94 (2), p.525-531

2008

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Electrostatic Origin of Salt-Induced Nucleosome Array Compaction

Biophysical journal, 2010-09, Vol.99 (6), p.1896-1905

2010

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Molecular dynamics simulations demonstrate the regulation of DNA-DNA attraction by H4 histone tail acetylations and mutations

Biopolymers, 2014-10, Vol.101 (10), p.1051-1064

2014

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Force Field Development for Lipid Membrane Simulations

Biochimica et biophysica acta, 2016-10, Vol.1858 (10), p.2483-2497

2016

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Effect of lipid saturation on amyloid-beta peptide partitioning and aggregation in neuronal membranes: molecular dynamics simulations

European biophysics journal, 2019-12, Vol.48 (8), p.813-824

2019

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Multiscale modeling reveals the ion-mediated phase separation of nucleosome core particles

Biophysical journal, 2024-06, Vol.123 (11), p.1414-1434

2024

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Anesthetics mechanism on a DMPC lipid membrane model: Insights from molecular dynamics simulations

Biophysical chemistry, 2017-07, Vol.226, p.1-13

2017

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On the Competition between Water, Sodium Ions, and Spermine in Binding to DNA: A Molecular Dynamics Computer Simulation Study

Biophysical journal, 2002-06, Vol.82 (6), p.2860-2875

2002

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Multiscale modeling of lipids and lipid bilayers

European biophysics journal, 2005-12, Vol.35 (1), p.53-61

Lyubartsev, Alexander P

2005

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NMR investigations of interactions between anesthetics and lipid bilayers

Biochimica et biophysica acta, 2008-11, Vol.1778 (11), p.2604-2611

2008

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Molecular dynamics simulations of local anesthetic articaine in a lipid bilayer

Biophysical chemistry, 2010-12, Vol.153 (1), p.27-35

2010

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Computing Curvature Sensitivity of Biomolecules in Membranes by Simulated Buckling

Journal of chemical theory and computation, 2018-03, Vol.14 (3), p.1643-1655

2018

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Competitive binding of Mg2+, Ca2+, Na+, and K+ ions to DNA in oriented DNA fibers: experimental and Monte Carlo simulation results

Biophysical journal, 1999-11, Vol.77 (5), p.2736-2749

1999

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Unperturbed hydrocarbon chains and liquid phase bilayer lipid chains: a computer simulation study

European biophysics journal, 2018-03, Vol.47 (2), p.109-130

2018

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Computer Modeling Demonstrates that Electrostatic Attraction of Nucleosomal DNA is Mediated by Histone Tails

Biophysical journal, 2006-06, Vol.90 (12), p.4305-4316

2006

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Computer Modeling Reveals that Modifications of the Histone Tail Charges Define Salt-Dependent Interaction of the Nucleosome Core Particles

Biophysical journal, 2009-03, Vol.96 (6), p.2082-2094

2009

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A new AMBER-compatible force field parameter set for alkanes

Journal of molecular modeling, 2014-03, Vol.20 (3), p.2143-2143, Article 2143

2014

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A molecular dynamics simulation study of polyamine- and sodium-DNA. Interplay between polyamine binding and DNA structure

European biophysics journal, 2004-12, Vol.33 (8), p.671-682

2004

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Binding energy calculations for hevein–carbohydrate interactions using expanded ensemble molecular dynamics simulations

Journal of computer-aided molecular design, 2015-01, Vol.29 (1), p.13-21

2015

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Dynamical and structural properties of charged and uncharged lidocaine in a lipid bilayer

Biophysical chemistry, 2007-02, Vol.125 (2), p.416-424

2007

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Molecular dynamics simulation study of oriented polyamine‐ and Na‐DNA: Sequence specific interactions and effects on DNA structure

Biopolymers, 2004-04, Vol.73 (5), p.542-555

2004

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Application of polyelectrolyte theories for analysis of DNA melting in the presence of Na+ and Mg2+ ions

Biophysical journal, 1998-12, Vol.75 (6), p.3041-3056

1998

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Electrostatic Background of Chromatin Fiber Stretching

Journal of biomolecular structure & dynamics, 2004-10, Vol.22 (2), p.215-226

2004

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Application of the Poisson Boltzmann polyelectrolyte model for analysis of thermal denaturation of DNA in the presence of Na + and polyamine cations

Biophysical chemistry, 2003-05, Vol.104 (1), p.55-66

2003

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Inverse Monte Carlo Methods

Coarse-Grained Modeling of Biomolecules, 2018, Vol.1, p.1-26

1, 2018

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Effect of Local Anesthetic Lidocaine on Electrostatic Properties of a Lipid Bilayer

Electrostatic Origin of Salt-Induced Nucleosome Array Compaction

Molecular dynamics simulations demonstrate the regulation of DNA-DNA attraction by H4 histone tail acetylations and mutations

Force Field Development for Lipid Membrane Simulations

Effect of lipid saturation on amyloid-beta peptide partitioning and aggregation in neuronal membranes: molecular dynamics simulations

Multiscale modeling reveals the ion-mediated phase separation of nucleosome core particles

Anesthetics mechanism on a DMPC lipid membrane model: Insights from molecular dynamics simulations

On the Competition between Water, Sodium Ions, and Spermine in Binding to DNA: A Molecular Dynamics Computer Simulation Study

Multiscale modeling of lipids and lipid bilayers

NMR investigations of interactions between anesthetics and lipid bilayers

Molecular dynamics simulations of local anesthetic articaine in a lipid bilayer

Computing Curvature Sensitivity of Biomolecules in Membranes by Simulated Buckling

Competitive binding of Mg2+, Ca2+, Na+, and K+ ions to DNA in oriented DNA fibers: experimental and Monte Carlo simulation results

Unperturbed hydrocarbon chains and liquid phase bilayer lipid chains: a computer simulation study

Computer Modeling Demonstrates that Electrostatic Attraction of Nucleosomal DNA is Mediated by Histone Tails

Computer Modeling Reveals that Modifications of the Histone Tail Charges Define Salt-Dependent Interaction of the Nucleosome Core Particles

A new AMBER-compatible force field parameter set for alkanes

A molecular dynamics simulation study of polyamine- and sodium-DNA. Interplay between polyamine binding and DNA structure

Binding energy calculations for hevein–carbohydrate interactions using expanded ensemble molecular dynamics simulations

Dynamical and structural properties of charged and uncharged lidocaine in a lipid bilayer

Molecular dynamics simulation study of oriented polyamine‐ and Na‐DNA: Sequence specific interactions and effects on DNA structure

Application of polyelectrolyte theories for analysis of DNA melting in the presence of Na+ and Mg2+ ions

Electrostatic Background of Chromatin Fiber Stretching

Application of the Poisson Boltzmann polyelectrolyte model for analysis of thermal denaturation of DNA in the presence of Na + and polyamine cations

Inverse Monte Carlo Methods

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