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dbCAN3: automated carbohydrate-active enzyme and substrate annotation

Nucleic acids research, 2023-07, Vol.51 (W1), p.W115-W121

2023

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dbCAN: a web resource for automated carbohydrate-active enzyme annotation

Nucleic acids research, 2012-07, Vol.40 (Web Server issue), p.W445-W451

2012

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Antimicrobial peptide identification using multi-scale convolutional network

BMC bioinformatics, 2019-12, Vol.20 (1), p.730-730, Article 730

2019

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A representation learning model based on variational inference and graph autoencoder for predicting lncRNA-disease associations

BMC bioinformatics, 2021-03, Vol.22 (1), p.136-136, Article 136

2021

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eCAMI: simultaneous classification and motif identification for enzyme annotation

Bioinformatics, 2020-04, Vol.36 (7), p.2068-2075

2020

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Early lignin pathway enzymes and routes to chlorogenic acid in switchgrass (Panicum virgatum L.)

Plant molecular biology, 2014-03, Vol.84 (4-5), p.565-576

2014

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pHMM-tree: phylogeny of profile hidden Markov models

Bioinformatics (Oxford, England), 2017-04, Vol.33 (7), p.1093-1095

2017

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Critical assessment of pan-genomic analysis of metagenome-assembled genomes

Briefings in bioinformatics, 2022-11, Vol.23 (6)

2022

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Cadmium stress triggers significant metabolic reprogramming in Enterococcus faecium CX 2–6

Computational and structural biotechnology journal, 2021-01, Vol.19, p.5678-5687

2021

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A Heterogeneous Networks Fusion Algorithm Based on Local Topological Information for Neurodegenerative Disease

Current bioinformatics, 2017-10, Vol.12 (5)

2017

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Identification of Novel Proteins Involved in Plant Cell-Wall Synthesis Based on Protein−Protein Interaction Data

Journal of proteome research, 2010-10, Vol.9 (10), p.5025-5037

2010

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The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes

Glycobiology (Oxford), 2012-03, Vol.22 (3), p.439-451

2012

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BERMAD: batch effect removal for single-cell RNA-seq data using a multi-layer adaptation autoencoder with dual-channel framework

Bioinformatics (Oxford, England), 2024-03, Vol.40 (3)

2024

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dbCAN2: a meta server for automated carbohydrate-active enzyme annotation

Nucleic acids research, 2018-07, Vol.46 (W1), p.W95

2018

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ORFanFinder: automated identification of taxonomically restricted orphan genes

Bioinformatics, 2016-07, Vol.32 (13), p.2053-2055

2016

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dbAPIS: a database of anti-prokaryotic immune system genes

Nucleic acids research, 2024-01, Vol.52 (D1), p.D419

2024

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dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation

Nucleic acids research, 2018-01, Vol.46 (D1), p.D516-D521

2018

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LR-GNN: a graph neural network based on link representation for predicting molecular associations

Briefings in bioinformatics, 2022-01, Vol.23 (1)

2022

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Identification of a Bifunctional UDP-4-keto-pentose/UDP-xylose Synthase in the Plant Pathogenic Bacterium Ralstonia solanacearum Strain GMI1000, a Distinct Member of the 4,6-Dehydratase and Decarboxylase Family

The Journal of biological chemistry, 2010-03, Vol.285 (12), p.9030-9040

2010

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GolgiP: prediction of Golgi-resident proteins in plants

Bioinformatics, 2010-10, Vol.26 (19), p.2464-2465

2010

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dbCAN-PUL: a database of experimentally characterized CAZyme gene clusters and their substrates

Nucleic acids research, 2021-01, Vol.49 (D1), p.D523-D528

2021

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Characterization and Development of EST-SSRs by Deep Transcriptome Sequencing in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)

International journal of genomics, 2015-01, Vol.2015 (2015), p.1-11

2015

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Genome mining for anti-CRISPR operons using machine learning

Bioinformatics (Oxford, England), 2023-05, Vol.39 (5)

2023

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HDMC: a novel deep learning-based framework for removing batch effects in single-cell RNA-seq data

Bioinformatics (Oxford, England), 2022-02, Vol.38 (5), p.1295-1303

2022

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AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses

Nucleic acids research, 2020-07, Vol.48 (W1), p.W358-W365

2020

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dbCAN3: automated carbohydrate-active enzyme and substrate annotation

dbCAN: a web resource for automated carbohydrate-active enzyme annotation

Antimicrobial peptide identification using multi-scale convolutional network

A representation learning model based on variational inference and graph autoencoder for predicting lncRNA-disease associations

eCAMI: simultaneous classification and motif identification for enzyme annotation

Early lignin pathway enzymes and routes to chlorogenic acid in switchgrass (Panicum virgatum L.)

pHMM-tree: phylogeny of profile hidden Markov models

Critical assessment of pan-genomic analysis of metagenome-assembled genomes

Cadmium stress triggers significant metabolic reprogramming in Enterococcus faecium CX 2–6

A Heterogeneous Networks Fusion Algorithm Based on Local Topological Information for Neurodegenerative Disease

Identification of Novel Proteins Involved in Plant Cell-Wall Synthesis Based on Protein−Protein Interaction Data

The ability of land plants to synthesize glucuronoxylans predates the evolution of tracheophytes

BERMAD: batch effect removal for single-cell RNA-seq data using a multi-layer adaptation autoencoder with dual-channel framework

dbCAN2: a meta server for automated carbohydrate-active enzyme annotation

ORFanFinder: automated identification of taxonomically restricted orphan genes

dbAPIS: a database of anti-prokaryotic immune system genes

dbCAN-seq: a database of carbohydrate-active enzyme (CAZyme) sequence and annotation

LR-GNN: a graph neural network based on link representation for predicting molecular associations

Identification of a Bifunctional UDP-4-keto-pentose/UDP-xylose Synthase in the Plant Pathogenic Bacterium Ralstonia solanacearum Strain GMI1000, a Distinct Member of the 4,6-Dehydratase and Decarboxylase Family

GolgiP: prediction of Golgi-resident proteins in plants

dbCAN-PUL: a database of experimentally characterized CAZyme gene clusters and their substrates

Characterization and Development of EST-SSRs by Deep Transcriptome Sequencing in Chinese Cabbage (Brassica rapa L. ssp. pekinensis)

Genome mining for anti-CRISPR operons using machine learning

HDMC: a novel deep learning-based framework for removing batch effects in single-cell RNA-seq data

AcrFinder: genome mining anti-CRISPR operons in prokaryotes and their viruses

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